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- From: c.gross@physik.uni-frankfurt.de
- To: forum@abinit.org
- Subject: Definition of hexagonal cell / MgZn2
- Date: Tue, 22 Jul 2003 14:54:15 +0200
Hello everybody,
this is (probably) a newbie question...
I am trying to define the unit cell of MgZn2 (primitive hexagonal) by the
following lines in my input file:
------------
#Definition of the unit cell
acell 5.223 5.223 8.5666 angstrom
angdeg 90 90 120 # hexagonal cell
spgroup 194 # space group no 194, P63/mmc
#Definition of the atom types
ntypat 2 # Two types of atoms (Mg, Zn)
znucl 12 30 # The keyword "znucl" refers...
#Definition of the atoms
natom 3 # There are three atoms
typat 1 2 2 # First atom: type 1, second: type 2, third: type 2
xred # This keyword indicate that the location of the atoms
# will follow, one triplet of number for each atom
1/3 2/3 0.06286 # Triplet giving the REDUCED coordinate of atom 1 (Mg).
0.83048 0.66096 1/4 # Triplet giving the REDUCED coordinate of atom 2 (Zn2).
0 0 0 # Triplet giving the REDUCED coordinate of atom 3 (Zn1).
(...)
------------
But, ABINIT sends lots of warnings of the following type to the log file (and
finally stops):
------------
symatm : WARNING -
Trouble finding symmetrically equivalent atoms
Applying inv of symm number 2 to atom number 1 of typat 1
gives tratom= 6.6667E-01 3.3333E-01 -4.3714E-01.
This is further away from every atom in crystal than the allowed tolerance.
The inverse symmetry matrix is 0 -1 0
1 1 0
0 0 1
and the nonsymmorphic transl. tnons = 0.0000000 0.0000000 0.5000000
The nearest coordinate differs by 3.333E-01 -3.333E-01 5.000E-01
for indsym(nearest atom)= 1
This indicates that when symatm attempts to find atoms symmetrically
related to a given atom, the nearest candidate is further away than some
tolerance. Should check atomic coordinates and symmetry group input data.
------------
Is this a problem with my input file ? Am I using the SPGROUP command
correctly, or am I supposed to provide the positions of all atoms in the unit
cell, not just the asymmetric unit ?
I would be thankful for a hint,
Christoph
- Definition of hexagonal cell / MgZn2, c . gross, 07/22/2003
- Re: [abinit-forum] Definition of hexagonal cell / MgZn2, Masayoshi Mikami, 07/22/2003
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