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Re: Re: [abinit-forum] about structure optimization


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  • From: myid520@163.com
  • To: forum@abinit.org
  • Subject: Re: Re: [abinit-forum] about structure optimization
  • Date: Fri, 25 Mar 2005 04:47:31 +0100

Ni hao lfe11 and Masayoshi,

I also come across the same problem as lfe11 sometimes. First, it gives the
symatm warning as following, then gives the error as showing by lfe11. but it
sometimes doesn’t give the error too.

I think the reason for this is that the symmetry is broken in the relaxing.
When I come across the problem, I also set nsym to zero and restart the
running using the atomic coordinates that gives the error to let the program
analyze the new symmetry of system. Setting nsym=1 is ok of course, but it
will waste a lot of time.

What puzzle me is why it sometimes doesn’t give the error.

Best wishes

Zhenhua Zeng
Hunan University, PR china

#########################################################
symatm : WARNING -
Trouble finding symmetrically equivalent atoms
Applying inv of symm number 3 to atom number 7 of typat 1
gives tratom= 6.6773E-01 1.0608E-03 2.5044E-01.
This is further away from every atom in crystal than the allowed tolerance.
The inverse symmetry matrix is -1 -1 0
1 0 0
0 0 1
and the nonsymmorphic transl. tnons = 0.3333333 -0.3333333 0.0000000
The nearest coordinate differs by -4.221E-06 -2.111E-06 0.000E+00
for indsym(nearest atom)= 8
…
…
symatm : WARNING -
Trouble finding symmetrically equivalent atoms
Applying inv of symm number 6 to atom number 12 of typat 1
gives tratom= -3.1491E-01 -6.6670E-01 3.7288E-01.
This is further away from every atom in crystal than the allowed tolerance.
The inverse symmetry matrix is 1 0 0
-1 -1 0
0 0 1
and the nonsymmorphic transl. tnons = 0.3333333 -0.3333333 0.0000000
The nearest coordinate differs by -3.519E-05 -7.038E-05 0.000E+00
for indsym(nearest atom)= 12



  • Re: Re: [abinit-forum] about structure optimization, myid520, 03/25/2005

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