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Re: [abinit-forum] total energy calculation


Chronological Thread 
  • From: Masayoshi Mikami <mmikami@rc.m-kagaku.co.jp>
  • To: forum@abinit.org
  • Subject: Re: [abinit-forum] total energy calculation
  • Date: Wed, 3 Aug 2005 13:58:58 +0900

Hi, "Nee how,"

I do not know how it went bad, but my suggestion is :
System which has peculiar (non-classical) chemical bond
may have such difficulty with SCF convergence.

In your case, C-O bond length is 3.85 x 2 = 7.7 bohr
= 4.07 angstrom, which is much longer than typical
C-O bond length in CO (about 1.2 angstrom ? Kindly check it).
So, initial DEN/WFK may be carefully prepared, e.g.,
starting the optimized structure, then running a series of
SCF calculation by increasing the C-O bond gradually (carefully!)
wherein the initial DEN/WFK for the n-th SCF calculation
can be obtained from the (n-1)-th SCF calculation result.

In passing, its spin state should also be carefully examined...
(Please take a look into the Test_*, some of which may be
revised to be useful for your case...)

Good luck,
Masayoshi

On 2005/08/03, at 11:11, occupierliu@yahoo.com.cn wrote:

Dear abinit user:
When I try to calculate the total energy of two atoms at ground state, the abinis version 4.4.3 break off undesignedly. The error message in the log file is:
vtowfk : BUG For istwf_k=2, observed the following element of evec :
3 1 nan nan
with a non-negligible imaginary part.
Action : contact ABINIT group.

Delivered 6 WARNINGs and 0 COMMENTs to log file.

leave_new : decision taken to exit ...

with warnings like:
scfcge: WARNING -
Potential-based CG line minimization has trouble to converge.
The algorithm is restarted with more secure parameters.

I've changed the iscf from default 5 to 3, but it didn't work.
Do I need to change some parameters? I appreciate any advice.



Input file:
# C-O potential energy calculation
#

#Definition of the unit cell
acell: 40 34 34 # The keyword "acell" refers to the
# lengths of the primitive vectors (in Bohr)

#Definition of the atom types
ntypat 2 # There is only one type of atom
znucl 8 6 # The keyword "znucl" refers to the atomic number of the
# possible type(s) of atom. The pseudopotential(s)
# mentioned in the "files" file must correspond
# to the type(s) of atom. Here, the only type is Hydrogen.
nband 10
getwfk -1

#Definition of the atoms
natom 2 # There are two atoms
typat 1 2 # They both are of type 1, that is, Hydrogen
xcart
-3.85 20.0 20.0
3.85 20.0 20.0
#Definition of the planewave basis set
ecut 30.0 # Maximal plane-wave kinetic energy cut-off, in Hartree

#Definition of the k-point grid
nkpt 1 # Only one k point is needed for isolated system,
# taken by default to be 0.0 0.0 0.0

#Definition of the SCF procedure
#iscf 3
nstep 1000 # Maximal number of SCF cycles
toldfe 1.0d-12 # Will stop when, twice in a row, the difference
# between two consecutive evaluations of total energy
# differ by less than toldfe (in Hartree)
diemac 1.0 # Although this is not mandatory, it is worth to
# precondition the SCF cycle. The model dielectric
diemix 0.5 # function used as the standard preconditioner
# is described in the "dielng" input variable section.
# Here, we follow the prescriptions for molecules
# in a big box





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