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[htor@cs.indiana.edu: Re: [abinit-forum] p4_error: interrupt SIGx: 13 in band structure calculation]


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  • From: Torsten Hoefler <torsten.hoefler@cs.tu-chemnitz.de>
  • To: forum@abinit.org
  • Subject: [htor@cs.indiana.edu: Re: [abinit-forum] p4_error: interrupt SIGx: 13 in band structure calculation]
  • Date: Thu, 1 Jun 2006 22:38:58 +0200

Hi,
> -P-0000 leave_test : synchronization done...
> kpgio: loop on k-points done in parallel
> newkpt : in paral mode, only node 0 describes in the main output file the
> copying of wfs.
> -P-0000 wfconv: 235 bands initialized randomly with npw= 11857, for
> ikpt= 1
> -P-0000 wfp12_3203: p4_error: net_recv read: probable EOF on socket: 1
> rm_l_12_3204: (3372.113281) net_send: could not write to fd=5, errno = 32
> conv: 235 bands initialized randomly with npw= 23727, for ikpt= 2
> -P-0000 wfconv: 235 bands initialized randomly with npw= 23749, for
> ikpt= 3
> p0_29430: p4_error: interrupt SIGx: 13
this is an MPICH/MPICH2 error in MPICH's p4 (TCP) device. This occurs
clearly inside the MPI Layer (but may be caused from upper layers by
passing a wrong memory pointer so MPI). But it looks like your TCP
breaks down/misbehaves. Which operating system are you using?

I would recommend to try another MPI implementation if possible to see
if the error is code or MPI related. You could try:
1. Open MPI (www.open-mpi.org)
2. LAM/MPI (www.lam-mpi.org)

Best,
Torsten

--
Torsten Hoefler bash$ :(){ :|:&};:
address: Indiana University | http://www.indiana.edu
Open Systems Lab | http://osl.iu.edu
150 S. Woodlawn Ave. | Bloomington, IN, 474045-7104 | USA
Lindley Hall Room 415 | +01 (812) 856-1820


  • [htor@cs.indiana.edu: Re: [abinit-forum] p4_error: interrupt SIGx: 13 in band structure calculation], Torsten Hoefler, 06/01/2006

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