The ABINIT Users Mailing List ( CLOSED )

[chinafuentes2000@yahoo.com]

Hi

We have problems running abinip in our cluster ( one server and 2 nodes).
When we try to submit a parallel job, the mpirun give us the following msg:

forrtl: severe (24): end-of-file during read, unit 5, file stdin
Image              PC        Routine            Line        Source
abinip             08F13C2C  Unknown               Unknown  Unknown
abinip             08F13724  Unknown               Unknown  Unknown
abinip             08EE0AED  Unknown               Unknown  Unknown
abinip             08EACC40  Unknown               Unknown  Unknown
abinip             08EAD0E3  Unknown               Unknown  Unknown
abinip             08EC6A30  Unknown               Unknown  Unknown
abinip             081FFD76  Unknown               Unknown  Unknown
abinip             080483A8  Unknown               Unknown  Unknown
abinip             08048268  Unknown               Unknown  Unknown
abinip             08F1A32C  Unknown               Unknown  Unknown
abinip             08048121  Unknown               Unknown  Unknown
-----------------------------------------------------------------------------
It seems that [at least] one of the processes that was started with
mpirun did not invoke MPI_INIT before quitting (it is possible that
more than one process did not invoke MPI_INIT -- mpirun was only
notified of the first one, which was on node n0).

mpirun can *only* be used with MPI programs (i.e., programs that
invoke MPI_INIT and MPI_FINALIZE).  You can use the "lamexec" program
to run non-MPI programs over the lambooted nodes.
-----------------------------------------------------------------------------
forrtl: error (78): process killed (SIGTERM)


our cluster was mounted using Oscar package.

we submit the job in the following way:

mpirun -np 2 /abinitbin-4.6.5/abinip < tparal_1.files > logp

here is the lamnodes command output:

n0      lqc.uach.mx:1:origin,this_node
n1      lqc01.fcq.uach.mx:1:
n2      lqc02.fcq.uach.mx:1:

we downloaded and installed the following version:
pclinux_ifc-4.6.5.tar.gz

we use the binaries included in the .tgz. ( we did not compile)

Why abinip does not run in the nodes ?

Is it necessary to compile abinit or just use the binaries of the package ?


the following runs OK:

mpirun -np 1 /abinitbin-4.6.5/abinip < tparal_1.files > logp
mpirun n0 /abinitbin-4.6.5/abinip < tparal_1.files > logp

the following does not runs:

mpirun N /abinitbin-4.6.5/abinip < tparal_1.files > logp
mpirun n1 /abinitbin-4.6.5/abinip < tparal_1.files > logp

Thanks for your help.