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- From: "Anglade Pierre-Matthieu" <anglade@gmail.com>
- To: forum@abinit.org
- Subject: Re: [abinit-forum] FCC 111 coordinates
- Date: Tue, 27 Jun 2006 08:50:05 +0200
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I suppose that the following input is almost of the kind you want.
acell 3*7.50559090E+00 # Lattice parameters of bulk aluminum
rprim 0.5 -0.5 0.0
0.5 0.5 0.0
0.0 0.0 12.5
natom 13
nband 28
#Definition of the k-point grid
kptopt 1 # Option for the automatic generation of k points, taking
# into account the symmetry
ngkpt 4 4 1
nshiftk 2
shiftk 0.5 0.0 0.0
0.0 0.5 0.0
#Definition of the atom types
ntypat 1 # There is only one type of atom
znucl 13 # The keyword "znucl" refers to the atomic number of the
# possible type(s) of atom. The pseudopotential(s)
# mentioned in the "files" file must correspond
# to the type(s) of atom. Here, the only type is Aluminum
#Definition of the atoms
typat 1 1 1 1 1 1 1 1 1 1 1 1 1 # All possible atoms are type 1.
xcart
3*0.0 # Triplet giving the CARTESIAN coordinates of atom 1.
0.0 2*3.75279545 # Triplet giving the CARTESIAN coordinates of atom 2.
2*0.0 7.5055909 # Triplet giving the CARTESIAN coordinates of atom 3.
0.0 3.75279545 11.25838635 # Triplet giving the CARTESIAN
coordinates of atom 4.
2*0.0 15.0111818 # Triplet giving the CARTESIAN coordinates of atom 5.
0.0 3.75279545 18.76397725 # Triplet giving the CARTESIAN
coordinates of atom 6.
2*0.0 22.5167727 # Triplet giving the CARTESIAN coordinates of atom 7.
0.0 3.75279545 26.26956815 # Triplet giving the CARTESIAN
coordinates of atom 8.
2*0.0 30.0223636 # Triplet giving the CARTESIAN coordinates of atom 9.
0.0 3.75279545 33.77515905 # Triplet giving the CARTESIAN
coordinates of atom 10.
2*0.0 37.5279545 # Triplet giving the CARTESIAN coordinates of atom 11.
0.0 3.75279545 41.28074995 # Triplet giving the CARTESIAN
coordinates of atom 12.
2*0.0 45.0335454 # Triplet giving the CARTESIAN coordinates of atom 13.
On 6/27/06, Anglade Pierre-Matthieu <anglade@gmail.com> wrote:
There is many options. One of them is to replace your
1 1 1 vector in rprim by n n n
then to have 3*n atoms. Each pack of three atoms must be shifted by
1/n from the previous one.
The third coordinate of the first pack must be simply divided by n.
You can also use cartesian coordinates (xcart) this will allow you to
change your cell size or geometry without moving atoms.
On 6/27/06, James Johns <jej7x@xenon.cchem.berkeley.edu> wrote:
> ok, so that works for the bulk crystal, but now I want to expand it
> along the 111 direction so that I have vacuum, metal, vacuum. This point
> at 1/3 2/3 2/3 is not on the 111 surface right? How then do I extend my
> rpim?
>
> On Mon, 26 Jun 2006, Anglade Pierre-Matthieu wrote:
>
> > Hi,
> >
> > I might mistake but try (1/3, 2/3, 2/3) as your third atom
> > coordinates. This is eqivalent to the atom in (0.5 1 0.5) in the cubic
> > cell.
> >
> > reagrds
> >
> > PMA
> >
> > On 6/25/06, jej7x@xenon.cchem.berkeley.edu
> > <jej7x@xenon.cchem.berkeley.edu> wrote:
> >> Hi, I'm pretty new to abinit, and I'm trying to look at the 111 surface
of
> >> Ag. To do that, I'm trying to follow my way through the
> >> tutorials, and so I'm starting with tutorial #4, and adapting that to the
> >> 111 surface. As a first step, I tried adjusting rprim so that
> >> one of my axes will be along the 111 direction, and the other 2 would
stay
> >> in the 111 plane. So I created the following input file. When
> >> I use this, everything converges with no warnings, but the ions end up at
> >> the following coordinates
> >> xred
> >> 0.0 0.0 -.036307
> >> 2/3 1/3 0.277767859
> >> 0.0 1.0 5.91873013
> >> These changes are on the order of -.2 to -.4 bohr in the 111 direction
> >>
> >>
> >> However, if I change my coordinates back to the typical fcc lattice
> >> (rprim = 0.5 0.5 0
> >> 0.5 0.0 0.5
> >> 0.0 0.5 0.5
> >> natom 1
> >> xred 0.0 0.0 0.0)
> >> I get no ion movement, and it says that at MD/Broyden step 0, all
gradients
> >> converged. It also gives no xred, xcart, or xangst in the
> >> output file (I assume b/c they didn't change). Did I just redefine the
FCC
> >> crystal using a poor (or even plain outright wrong) basis?
> >> Help would be awesome.
> >> --James
> >>
> >>
--------------------------------------------------------------------------
> >> #Bulk Aluminum FCC crystal (I hope)
> >>
> >> occopt 4
> >> tsmear 0.04
> >> nband 8
> >> kptopt 1
> >> ngkpt 6 6 6
> >> nshiftk 1
> >> shiftk 0.5 0.5 0.5
> >>
> >>
> >> #Definition of the unit cell
> >> acell 3*7.50559090E+00 # Lattice parameters of bulk aluminum
> >> rprim 0.5 0.0 -0.5 # These values will define a cell with three
> >> atoms,
> >> -0.5 0.5 0.0 # non-primitive, with a different orientation
> >> 1.0 1.0 1.0 # than the primitive cell.
> >> chkprim 0
> >> ntypat 1
> >> znucl 13
> >>
> >> #Definition of the atoms
> >> natom 3
> >> typat 3*1
> >> xred 0.0 0.0 0.0
> >> 2/3 1/3 1/3
> >> 0.0 1.0 0.5
> >>
> >> #Convergence Criteria
> >> ionmov 2
> >> tolmfx 1d-4
> >> ntime 15
> >> getwfk -1
> >> nstep 10
> >> toldfe 1d-6
> >>
> >>
-------------------------------------------------------------------------------
> >>
> >>
> >
> >
> >
>
--
Pierre-Matthieu Anglade
--
Pierre-Matthieu Anglade
- FCC 111 coordinates, jej7x, 06/25/2006
- Re: [abinit-forum] FCC 111 coordinates, Anglade Pierre-Matthieu, 06/26/2006
- Re: [abinit-forum] FCC 111 coordinates, James Johns, 06/27/2006
- Re: [abinit-forum] FCC 111 coordinates, Anglade Pierre-Matthieu, 06/27/2006
- Re: [abinit-forum] FCC 111 coordinates, Anglade Pierre-Matthieu, 06/27/2006
- Re: [abinit-forum] FCC 111 coordinates, Anglade Pierre-Matthieu, 06/27/2006
- Re: [abinit-forum] FCC 111 coordinates, James Johns, 06/27/2006
- Re: [abinit-forum] FCC 111 coordinates, Anglade Pierre-Matthieu, 06/26/2006
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