The ABINIT Users Mailing List ( CLOSED )

["Anglade Pierre-Matthieu" <anglade@gmail.com>]

Hi

It looks like this is a more difficult error. At least the error message is surprising for me. Because of Abinit's tests it really seldom happens that one find a bug in the code. In the same time it is very frequent to find compilers bugs that results in runtime errors. Anyway we need to have a more thorough look at what is happening.
 Could you please send
- your input file in order to reproduce the calculation;
- the "config.log" file (in  Abinit's root directory);
- complete compiler informations (editor+version);
- the completes log, output and stderr messages ?

Best,

PMA

On 8/11/07, Yu Chol Jun <yucj@ghi.rwth-aachen.de> wrote:

Dear Anglade Pierre-Matthieu,

thank you very much for your trick. I did so and solve the access
problem. However when I tried to implement, another runtime error was
appeared.

Looking forward to your replying,

Chol Jun.

Anglade Pierre-Matthieu wrote:
> Hi,
>
> Usually such kind of errors appear when the program can not access the
> specified file (here the standard input apparently (unit 5)).
> The first thing I would try is to configure with
> --disable-stdin
> Then name your input file " ab.files"
>
> This will hopefully make the trick
>
> regards
>
> PMA
>
> On 8/10/07, *Yu Chol Jun* < yucj@ghi.rwth-aachen.de
> <mailto:yucj@ghi.rwth-aachen.de>> wrote:
>
>     Dear abinit users,
>
>     I found runtime errors when I tried to implement abinip, which was
>     compiled by using mpich2-1.0.5p4. I am not sure what is the cause of
>     error.
>
>     Best regards,
>
>     Chol Jun
>
>
>     ------------------------------------------------------------------------------
>     | Execution of Batch-Request started at Wed Aug  10 22:00:52 CEST 2007
>     | on host linuxoc33.rz.RWTH-Aachen.DE
>     <http://linuxoc33.rz.RWTH-Aachen.DE>
>     | MPI tasks started on
>     |    linuxoc33.rz.RWTH-Aachen.DE <http://linuxoc33.rz.RWTH-Aachen.DE> 1
>     |     linuxoc43.rz.RWTH-Aachen.DE <http://linuxoc43.rz.RWTH-Aachen.DE> 1
>     |    linuxoc37.rz.RWTH-Aachen.DE < http://linuxoc37.rz.RWTH-Aachen.DE> 1
>     |    linuxoc36.rz.RWTH-Aachen.DE < http://linuxoc36.rz.RWTH-Aachen.DE> 1
>     | SGE Request: 1190364   Queue: linux_amd64_v40z.q
>     ------------------------------------------------------------------------------
>
>     (OK) Loading mpich2-64 1.0.5 with adaptive layer
>     At line 126 of file ../../../src/18seqpar/iofn1.F90 (Unit 5)
>     Fortran runtime error: End of file
>
>     ------------------------------------------------------------------------------
>     | Execution of Batch-Request stopped at Wed Aug  8 22:01:09 CEST 2007
>     | peak memory value: 207.406M
>     | real time used: 00:00:18
>     ------------------------------------------------------------------------------
>
>     Filesystem           Size     Used    Avail     Use%
>     /home/cy849828      1021M      60M     962M       6%
>
>
>
>
> --
> Pierre-Matthieu Anglade



iofn1 : COMMENT -
  Because of cpp option READ_FROM_FILE,
  read file "ab.files" instead of standard input

  ABINIT

  Give name for formatted input file:
b001-4layer-2cell2-phys1.in
  Give name for formatted output file:
b001-4layer-2cell2-phys1.out
  Give root name for generic input files:
b001-4layer-2cell2-phys1i
  Give root name for generic output files:
b001-4layer-2cell2-phys1o
  Give root name for generic temporary files:
b001-4layer-2cell2-phys1
-P-0000  leave_test : synchronization done...

.Version 5.3.4  of ABINIT
.(MPI version, prepared for a x86_64_linux_gnu computer)

.Copyright (C) 1998-2007 ABINIT group .
ABINIT comes with ABSOLUTELY NO WARRANTY.
It is free software, and you are welcome to redistribute it
under certain conditions (GNU General Public License,
see ~abinit/COPYING or http://www.gnu.org/copyleft/gpl.txt).

ABINIT is a project of the Universite Catholique de Louvain,
Corning Inc. and other collaborators, see ~abinit/doc/developers/contributors.txt .
Please read ~abinit/doc/users/acknowledgments.html for suggested
acknowledgments of the ABINIT effort.
For more information, see http://www.abinit.org .

.Starting date : Sat 11 Aug 2007.

- input  file    -> b001-4layer-2cell2-phys1.in
- output file    -> b001-4layer-2cell2-phys1.out
- root for input  files -> b001-4layer-2cell2-phys1i
- root for output files -> b001-4layer-2cell2-phys1o

instrng :    98 lines of input have been read

39264
52053
37547
-P-0001  leave_test : synchronization done...
-P-0002  leave_test : synchronization done...
-P-0003  leave_test : synchronization done...
rank 0 in job 1  linuxoc42.rz.RWTH-Aachen.DE_38971   caused collective abort of all ranks
  exit status of rank 0: return code 2


------------------------------------------------------------------------------
| Execution of Batch-Request started at Sat Aug 11 16:52:48 CEST 2007
| on host linuxoc42.rz.RWTH-Aachen.DE
| MPI tasks started on
|     linuxoc42.rz.RWTH-Aachen.DE 1
|    linuxoc36.rz.RWTH-Aachen.DE 1
|    linuxoc51.rz.RWTH-Aachen.DE 1
|     linuxoc37.rz.RWTH-Aachen.DE 1
| SGE Request: 1194019   Queue: linux_amd64_v40z.q
------------------------------------------------------------------------------

(OK) Loading mpich2-64 1.0.5 with adaptive layer
Fortran runtime error: Attempting to allocate already allocated array.

------------------------------------------------------------------------------
| Execution of Batch-Request stopped at Sat Aug 11 16:53:00 CEST 2007
| peak memory value: 207.445M
| real time used: 00:00:16
------------------------------------------------------------------------------

Filesystem           Size     Used    Avail     Use%
/home/cy849828       934M     384M     550M      42%

-- 
Pierre-Matthieu Anglade