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Re: [abinit-forum] Carbon nanotube - amino acid simulations


Chronological Thread 
  • From: Fabien Bruneval <fabien.bruneval@polytechnique.fr>
  • To: forum@abinit.org
  • Subject: Re: [abinit-forum] Carbon nanotube - amino acid simulations
  • Date: Thu, 25 Oct 2007 10:43:56 +0200

Dear George,

The GW approximation is indeed implemented in Abinit. However, in Abinit it is just meant to calculate the electronic band structure in a periodic system.

In principle, the GW approximation can be used to calculate total energies and forces, but the calculations are so cumbersome that only atoms have been calculated so far (see the work of R. van Leeuwen for instance).

If you really want to treat big systems like nanotube + amino acid, you can forget about the GW approximation and turn to simpler methods.

I hope to have clarified the situation.


Fabien







George Abadir wrote:
Dear Jean-Christophe,
Thank you very much for your reply. I am aware of the VDW problems with DFT. The point is that I need an accurate bandstructure for the CNT. As far as I understand, the GW approximation can do that and it is included in ABINIT. Could you guide me to other packages that can perform the calculations within the GW approximation for my problem? If not, can ABINIT in principle do the calculations may be at a large computational cost? Or will the size of the supercell be prohibitive in your opinion?
Thanks alot for your help,
Regards,
George

Jean-Christophe Charlier wrote:


Dear George,

ABINIT is probably not the best code to investigate amino
acids adsorbed on carbon nanotubes because your simulation
will need a large supercell and lot's of vacuum in order to
avoid the interaction between the repeated images.
DFT codes based on localized basis sets (and not plane-waves
like ABINIT) for the expansion of the wavefunctions are probably
more appropriate (i.e. Siesta, Gaussian, ...).

In addition, DFT has some problem to accurately describe weak
interactions such as VdW that you should observe when an amino
acid is adsorbed at the surface of a nanotube.

Regards, Jean-Christophe

On 25 Oct 2007, at 06:12, georgea@ece.ubc.ca wrote:

Hi all,
I am a new user to ABINIT. My goal is to perform simulations of amino acids adsorbed on carbon nanotubes. My question is: can ABINIT perform such simulations to get the electronic properties of the nanotube after the adsorption of the amino acid? If so, is there a way to visualize my input structure after building the input file and before actually performing the simulations?
And if not, are there other tools that can do it and have the
GW approximation?
Thanks alot,
Regards,
George










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