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Response function/Data set error


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  • From: avanderg <avanderg@mines.edu>
  • To: forum@abinit.org
  • Subject: Response function/Data set error
  • Date: Mon, 24 Mar 2008 15:53:55 -0600

Hello All,

I am interested in calculating the frequency dependent dielectric tensor for GaAs for an accurate number of k-points and value for ecut. So I took the tutorial for the frequency dependent tensor for AlAs and modified it for GaAs. I then have turned up the k-points and ecut to 3*24 and 20. I ran the job on 8 processors with 4 gigs of ram for each processor. Then as far as I can tell the job just dies during either the second or the third dataset. I have the ends of both the output and log files below. I have worked my way up to 3*24 k points and the jobs work up to about 3*20 kpoints. It is just the jobs with 3*20+ kpoints that die during one of the early data sets. All the related messages I have seen in previous posts have un-related error messages so I am un-able to determine the problem from them. I was hoping someone could point me in the correct direction for fixing this problem.

Thank you

Abram Van Der Geest

I have attached the input file and have put the final output for the .out file and the .log file below.


End of .out file:

"== DATASET 3 ==================================================================

mkfilename : getwfk/=0, take file _WFK from output of DATASET 2.

mkfilename : getden/=0, take file _DEN from output of DATASET 2.

Real(R)+Recip(G) space primitive vectors, cartesian coordinates (Bohr,Bohr^-1):
R(1)= 0.0000000 5.3000000 5.3000000 G(1)= -0.0943396 0.0943396 0.0943396
R(2)= 5.3000000 0.0000000 5.3000000 G(2)= 0.0943396 -0.0943396 0.0943396
R(3)= 5.3000000 5.3000000 0.0000000 G(3)= 0.0943396 0.0943396 -0.0943396
Unit cell volume ucvol= 2.9775400E+02 bohr^3
Angles (23,13,12)= 6.00000000E+01 6.00000000E+01 6.00000000E+01 degrees

getcut: wavevector= 0.0000 0.0000 0.0000 ngfft= 32 32 32
ecut(hartree)= 20.000 => boxcut(ratio)= 2.12070
--------------------------------------------------------------------------------

-inwffil : will read wavefunctions from disk file gaas_fo_DS2_WFK"




End of .log file:

" xred: | xred:
-P-0000 0.0000000 0.0000000 0.0000000 | 0.0000000 0.0000000 0.0000000
-P-0000 0.2500000 0.2500000 0.2500000 | 0.2500000 0.2500000 0.2500000
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 Restart of self-consistent calculation need translated wavefunctions.
-P-0000 Indeed, critical differences between current calculation and
-P-0000 restart file have been detected in:
-P-0000 * the number, position, or weight of k-points
-P-0000 * the format of wavefunctions (istwfk)
-P-0000 ================================================================================
"
#Prepare the computation of linear and non-linear optic properties
#of GaAs crystal : ground-state with few bands,
#then non-SCF with a larger number of bands, then ddk for different directions
#Note that the k point sampling shoud be finer for significant results. The
cut-off energy is also too low.

ndtset 6

#First dataset : SC run with kpoints in the IBZ
iscf1 3
nband1 20
nstep1 1000
kptopt1 1
nbdbuf1 0
prtden1 1 getden1 0 getwfk1 0 ! Usual file handling data

#Second dataset : NSC run with large number of bands, and points in the IBZ
iscf2 3
# iscf2 -2
nband2 20 ! This number of bands might be too low for non-linear optics
and real part of linear optics
nstep2 1000
kptopt2 2
# getwfk2 0 getden2 0 ! Usual file handling data
getwfk2 1 getden2 1 ! Usual file handling data

#Third dataset : NSC run with large number of bands, and points in the the
full BZ
iscf3 -2
nband3 20 ! This number of bands might be too low for non-linear optics
and real part of linear optics
nstep3 1000
kptopt3 3
getwfk3 2 getden3 2 ! Usual file handling data


#Fourth datset : ddk response function along axis 1
iscf4 -3
nband4 20 ! This number of bands might be too low for non-linear optics
and real part of linear optics
nstep4 1 nline4 0
kptopt4 3

nqpt4 1 qpt4 0.0d0 0.0d0 0.0d0
rfdir4 1 0 0
rfelfd4 2
getwfk4 3

#Fifth dataset : ddk response function along axis 2
iscf5 -3
nband5 20 ! This number of bands might be too low for non-linear optics
and real part of linear optics
nstep5 1 nline5 0
kptopt5 3

nqpt5 1 qpt5 0.0d0 0.0d0 0.0d0
rfdir5 0 1 0
rfelfd5 2
getwfk5 3

Sixth dataset : ddk response function along axis 3
iscf6 -3
nband6 20 ! This number of bands might be too low for non-linear optics
and real part of linear optics
nstep6 1 nline6 0
kptopt6 3

nqpt6 1 qpt6 0.0d0 0.0d0 0.0d0
rfdir6 0 0 1
rfelfd6 2
getwfk6 3


#Data common to all datasets
nshiftk 4
shiftk 0.5 0.5 0.5
0.5 0.0 0.0
0.0 0.5 0.0
0.0 0.0 0.5
ngkpt 24 24 24 ! This is much too low : should be at least 24x24x24

acell 3*10.60
amu 69.72 74.9216
diemac 10.0
ecut 20.00 ! This is also too low
iscf 3
ixc 1
natom 2 nbdbuf 2
ntypat 2
rprim 0 .5 .5 .5 0 .5 .5 .5 0
xred 3*0.00d0 3*0.25d0
tnons 72*0.0
typat 1 2 tolwfr 1.e-20
znucl 31 33



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