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- From: <pratik_8mar@yahoo.com>
- To: forum@abinit.org
- Subject: Re: [abinit-forum] Problem with abinip , linear algebra library
- Date: Wed, 14 May 2008 06:59:49 +0200
Here is my Input file.. and below that i have put the out put for the abinit
compiled without optimization and with debug flags on.. actually this
systemCd4Se4 has problem in SCF convergance but at least it should run on
abinip..
thanks for your response..
___________________________________________________________________________
acell 20 20 20
rprim 1 0 0 0 1 0 0 0 1
ntypat 2
znucl 34 48
typat 2 1 1 2 1 2 2 1
xangst
0.00000 0.00000 0.00000
2.68800 0.00000 0.00000
-0.6489 2.608495 0.00000
2.0391 2.608495 0.00000
0.00000 0.00000 2.68800
2.68800 0.00000 2.68800
-0.6489 2.608495 2.68800
2.0391 2.608495 2.68800
istwfk 1
natom 8
diemac 12
toldff 5.0d-5
ionmov 7
ecut 953 ev
iscf 7
nstep 40
ixc 1
kptopt 0
nkpt 1
kpt 0 0 0
ntime 50
nsym 1
chkprim 0
optcell 0
______________________________________________________________________________
log file for the abinit compiled with ought optimization and with debug flags
on..
###############################################################################
The Bravais lattice determined only from the primitive
vectors, bravais(1)= 7, is more symmetric
than the real one, iholohedry= 1, obtained by taking into
account the atomic positions.
symspgr : the symmetry operation no. 1 is the identity
symspgr : spgroup= 1 P1 (=C1^1)
inkpts: Sum of 1 k point weights is 1.000000
inkpts : istwfk preprocessed, gives following first values (max. 6): 1
invars1: mkmem undefined in the input file. Use default mkmem = nkpt
invars1: With nkpt_me= 1 and mkmem = 1, ground state wf handled in
core.
invars1: mkqmem undefined in the input file. Use default mkqmem = nkpt
invars1: With nkpt_me= 1 and mkqmem = 1, ground state wf handled in
core.
invars1: mk1mem undefined in the input file. Use default mk1mem = nkpt
invars1: With nkpt_me= 1 and mk1mem = 1, ground state wf handled in
core.
Symmetries : space group P1 (# 1); Bravais aP (primitive triclinic)
invars2: take the default value of fband= 1.25000000E-01
inkpts: Sum of 1 k point weights is 1.000000
inkpts : istwfk preprocessed, gives following first values (max. 6): 1
chkneu : initialized the occupation numbers for occopt= 1
spin-unpolarized case :
2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00
2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00
2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00
0.00
distrb2: enter
mpi_enreg%parareel= 0
mpi_enreg%paralbd= 0
mpi_enreg%paral_compil_respfn= 0
distrb2: exit
npfft and npband 1 1
For input ecut= 3.502211E+01 best grid ngfft= 108 108 108
max ecut= 3.597471E+01
getng: value of mgfft= 108 and nfft= 1259712
getng: values of ngfft(4),ngfft(5),ngfft(6) 109 109 108
getmpw: optimal value of mpw= 79117
getdim_nloc : deduce lmnmax = 8, lnmax = 2,
lmnmaxso= 8, lnmaxso= 2.
memory : analysis of memory needs
================================================================================
Values of the parameters that define the memory need of the present run
intxc = 0 ionmov = 7 iscf = 7 ixc =
1
lmnmax = 2 lnmax = 2 mband = 37 mffmem =
1
P mgfft = 108 mkmem = 1 mpssoang= 3 mpw =
79117
mqgrid = 3001 natom = 8 nfft = 1259712 nkpt =
1
nloalg = 4 nspden = 1 nspinor = 1 nsppol =
1
nsym = 1 n1xccc = 2501 ntypat = 2 occopt =
1
================================================================================
P This job should need less than 391.261 Mbytes of memory.
Rough estimation (10% accuracy) of disk space for files :
WF disk file : 44.669 Mbytes ; DEN or POT disk file : 9.613 Mbytes.
================================================================================
Biggest array : f_fftgr(disk), with 153.7754 MBytes.
memana : allocated an array of 153.775 Mbytes, for testing purposes.
memana : allocated 391.261 Mbytes, for testing purposes.
The job will continue.
-outvars: echo values of preprocessed input variables --------
acell 2.0000000000E+01 2.0000000000E+01 2.0000000000E+01 Bohr
amu 7.89600000E+01 1.12411000E+02
diemac 1.20000000E+01
ecut 3.50221063E+01 Hartree
ionmov 7
istwfk 1
P mkmem 1
natom 8
nband 37
ngfft 108 108 108
nkpt 1
nstep 40
nsym 1
ntime 50
ntypat 2
occ 2.000000 2.000000 2.000000 2.000000 2.000000 2.000000
2.000000 2.000000 2.000000 2.000000 2.000000 2.000000
2.000000 2.000000 2.000000 2.000000 2.000000 2.000000
2.000000 2.000000 2.000000 2.000000 2.000000 2.000000
2.000000 2.000000 2.000000 2.000000 2.000000 2.000000
2.000000 2.000000 2.000000 2.000000 2.000000 2.000000
0.000000
spgroup 1
toldff 5.00000000E-05
typat 2 1 1 2 1 2 2 1
xangst 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
2.6880000000E+00 0.0000000000E+00 0.0000000000E+00
-6.4890000000E-01 2.6084950000E+00 0.0000000000E+00
2.0391000000E+00 2.6084950000E+00 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 2.6880000000E+00
2.6880000000E+00 0.0000000000E+00 2.6880000000E+00
-6.4890000000E-01 2.6084950000E+00 2.6880000000E+00
2.0391000000E+00 2.6084950000E+00 2.6880000000E+00
xcart 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
5.0795838240E+00 0.0000000000E+00 0.0000000000E+00
-1.2262432825E+00 4.9293411484E+00 0.0000000000E+00
3.8533405415E+00 4.9293411484E+00 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 5.0795838240E+00
5.0795838240E+00 0.0000000000E+00 5.0795838240E+00
-1.2262432825E+00 4.9293411484E+00 5.0795838240E+00
3.8533405415E+00 4.9293411484E+00 5.0795838240E+00
xred 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
2.5397919120E-01 0.0000000000E+00 0.0000000000E+00
-6.1312164125E-02 2.4646705742E-01 0.0000000000E+00
1.9266702707E-01 2.4646705742E-01 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 2.5397919120E-01
2.5397919120E-01 0.0000000000E+00 2.5397919120E-01
-6.1312164125E-02 2.4646705742E-01 2.5397919120E-01
1.9266702707E-01 2.4646705742E-01 2.5397919120E-01
znucl 34.00000 48.00000
================================================================================
chkinp: machine precision is 2.2204460492503131E-16
chkinp: Checking input parameters for consistency.
chkinp: WARNING -
The output files provided (_WFK, _DEN, _POT ...) are not given
for the whole real or reciprocical grid, but for a slide.
Consequence : the restart and various utilities (aim ...) do not work.
-P-0000
-P-0000
================================================================================
-P-0000 == DATASET 1
==================================================================
-P-0000
dtsetcopy : copying area algalch the actual size ( 2
) of the index ( 1 ) differs from its standard size ( 0
)
dtsetcopy : copying area kberry the actual size ( 20
) of the index ( 2 ) differs from its standard size ( 1
)
dtsetcopy : copying area mixalch the actual size ( 2
) of the index ( 1 ) differs from its standard size ( 0
)
dtsetcopy : copying area mixalch the actual size ( 2
) of the index ( 2 ) differs from its standard size ( 0
)
dtsetcopy : copying area occ_orig the actual size ( 49
) of the index ( 1 ) differs from its standard size ( 37
)
dtsetcopy : copying area shiftk the actual size ( 8
) of the index ( 2 ) differs from its standard size ( 1
)
getdim_nloc : deduce lmnmax = 8, lnmax = 2,
lmnmaxso= 8, lnmaxso= 2.
npfft and npband 1 1
Unit cell volume ucvol= 8.0000000E+03 bohr^3
Angles (23,13,12)= 9.00000000E+01 9.00000000E+01 9.00000000E+01 degrees
getcut: wavevector= 0.0000 0.0000 0.0000 ngfft= 108 108 108
ecut(hartree)= 35.022 => boxcut(ratio)= 2.02702
- pspatm: opening atomic psp file 34se.pspnc
Troullier-Martins psp for element Se Thu Oct 27 17:37:31 EDT 1994
34.00000 6.00000 940714 znucl, zion, pspdat
1 1 1 1 2001 0.00000
pspcod,pspxc,lmax,lloc,mmax,r2well
0 9.068 20.364 1 1.8424568 l,e99.0,e99.9,nproj,rcpsp
0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2,
epsatm
1 5.300 11.403 0 1.8424568 l,e99.0,e99.9,nproj,rcpsp
0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2,
epsatm
1.85251755370876 0.58085246563034 3.22255112745851
rchrg,fchrg,qchrg
pspatm: epsatm= 30.96134535
--- l ekb(1:nproj) -->
0 3.199204
pspatm: atomic psp has been read and splines computed
- pspatm: opening atomic psp file 48cd.pspnc
Troullier-Martins psp for element Cd Thu Oct 27 17:42:55 EDT 1994
48.00000 12.00000 940714 znucl, zion, pspdat
1 1 2 0 2001 0.00000
pspcod,pspxc,lmax,lloc,mmax,r2well
0 6.985 11.144 0 2.3780416 l,e99.0,e99.9,nproj,rcpsp
0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2,
epsatm
1 2.452 4.565 1 2.8684763 l,e99.0,e99.9,nproj,rcpsp
0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2,
epsatm
2 15.239 19.567 1 2.3780416 l,e99.0,e99.9,nproj,rcpsp
0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2,
epsatm
1.48692763900022 3.42408503786346 9.82338189540900
rchrg,fchrg,qchrg
pspatm: epsatm= 84.51721575
--- l ekb(1:nproj) -->
1 0.679335
2 -6.932034
pspatm: atomic psp has been read and splines computed
3.32578256E+04 ecore*ucvol(ha*bohr**3)
mpi_enreg%paral_level 2
mpi_enreg%num_group_fft 1
before sum, npwtot 79117
after sum, npwtot 79117
-P-0000 wfconv: 37 bands initialized randomly with npw= 79117, for ikpt=
1
setup2: Arith. and geom. avg. npw (full set) are 79117.000 79117.000
initro : for itypat= 1, take decay length= 0.9500,
initro : indeed, coreel= 28.0000, nval= 6 and densty= 0.0000E+00.
initro : for itypat= 2, take decay length= 0.7500,
initro : indeed, coreel= 36.0000, nval= 12 and densty= 0.0000E+00.
================================================================================
MOLDYN STEP NUMBER 0
------------------------------------------------------
iter Etot(hartree) deltaE(h) residm vres2 diffor maxfor
getcut: wavevector= 0.0000 0.0000 0.0000 ngfft= 108 108 108
ecut(hartree)= 35.022 => boxcut(ratio)= 2.02702
ewald : nr and ng are 3 and 15
ITER STEP NUMBER 1
vtorho : nnsclo_now= 2, note that nnsclo,dbl_nnsclo,istep= 0 0 1
-P-0000
-P-0000 Non-SCF iterations; k pt # 1 k= 0.00000 0.00000 0.00000 band
residuals:
-P-0000 res: 2.60E+00 2.55E+00 2.65E+00 2.78E+00 2.50E+00 2.48E+00
2.47E+00 2.39E+00
-P-0000 res: 2.24E+00 2.65E+00 2.57E+00 2.62E+00 2.62E+00 2.49E+00
2.38E+00 2.51E+00
-P-0000 res: 2.55E+00 2.38E+00 2.66E+00 2.27E+00 2.60E+00 2.56E+00
2.58E+00 2.59E+00
-P-0000 res: 2.62E+00 2.17E+00 2.57E+00 2.74E+00 2.50E+00 2.50E+00
2.90E+00 2.60E+00
-P-0000 res: 2.49E+00 2.57E+00 2.58E+00 2.62E+00 2.20E+00
-P-0000 ene: 8.19E-04 2.79E-03 6.67E-03 7.99E-03 1.25E-02 1.71E-02
2.37E-02 2.85E-02
-P-0000 ene: 3.05E-02 3.27E-02 3.61E-02 4.25E-02 4.80E-02 5.55E-02
6.20E-02 6.42E-02
-P-0000 ene: 6.55E-02 7.83E-02 9.58E-02 1.13E-01 1.36E-01 1.57E-01
1.72E-01 1.85E-01
-P-0000 ene: 2.24E-01 2.50E-01 2.84E-01 3.67E-01 4.46E-01 5.07E-01
6.68E-01 7.94E-01
-P-0000 ene: 8.60E-01 1.18E+00 1.48E+00 1.92E+00 4.46E+01
-P-0000 res: 1.66E+00 1.58E+00 2.16E+00 2.36E+00 2.39E+00 1.38E+00
2.44E+00 2.46E+00
-P-0000 res: 2.47E+00 2.43E+00 2.45E+00 2.45E+00 2.48E+00 2.47E+00
2.46E+00 2.48E+00
-P-0000 res: 2.44E+00 2.48E+00 2.48E+00 2.48E+00 2.47E+00 2.47E+00
2.47E+00 2.47E+00
-P-0000 res: 2.48E+00 2.46E+00 2.46E+00 2.47E+00 2.41E+00 2.48E+00
2.55E+00 2.48E+00
-P-0000 res: 2.47E+00 2.42E+00 1.95E+00 2.62E+00 1.91E+00
-P-0000 ene: 1.28E-04 1.38E-04 1.80E-04 2.62E-04 3.35E-04 5.57E-04
8.90E-04 1.46E-03
-P-0000 ene: 2.04E-03 2.70E-03 3.16E-03 3.65E-03 4.38E-03 5.95E-03
8.22E-03 1.07E-02
-P-0000 ene: 1.28E-02 1.79E-02 2.19E-02 2.71E-02 3.16E-02 5.52E-02
5.89E-02 6.33E-02
-P-0000 ene: 7.37E-02 8.71E-02 1.07E-01 1.45E-01 1.92E-01 3.64E-01
4.18E-01 5.35E-01
-P-0000 ene: 5.72E-01 6.68E-01 9.70E-01 1.09E+00 4.47E+01
-P-0000 vtowfk : number of one-way 3D ffts skipped in vtowfk until now =
0
-P-0000 eigenvalues (hartree) for 37 bands
-P-0000 after 3 non-SCF iterations with 4 CG line
minimizations
-P-0000 1.2783E-04 1.3783E-04 1.7997E-04 2.6174E-04 3.3468E-04
5.5697E-04
-P-0000 8.8953E-04 1.4634E-03 2.0389E-03 2.7025E-03 3.1568E-03
3.6512E-03
-P-0000 4.3811E-03 5.9491E-03 8.2161E-03 1.0679E-02 1.2820E-02
1.7862E-02
-P-0000 2.1885E-02 2.7064E-02 3.1572E-02 5.5202E-02 5.8881E-02
6.3335E-02
-P-0000 7.3690E-02 8.7107E-02 1.0683E-01 1.4478E-01 1.9159E-01
3.6404E-01
-P-0000 4.1789E-01 5.3494E-01 5.7236E-01 6.6772E-01 9.6967E-01
1.0950E+00
-P-0000 4.4697E+01
,Min el dens= 0.0000E+00 el/bohr^3 at reduced coord. 0.0000 0.0000 0.0000
,Max el dens= 0.0000E+00 el/bohr^3 at reduced coord. 0.9907 0.9907 0.9907
ETOT 1 -8.4432145345665 -8.443E+00 2.617E+00 5.014E+06 7.147E+00
7.147E+00
scprqt: <Vxc>= -2.3545461E-02 hartree
Simple mixing update:
residual square of the potential : 237054.627393205
.
.
.
.
ITER STEP NUMBER 39
vtorho : nnsclo_now= 1, note that nnsclo,dbl_nnsclo,istep= 0 0 39
-P-0000
-P-0000 Non-SCF iterations; k pt # 1 k= 0.00000 0.00000 0.00000 band
residuals:
-P-0000 res: 1.23E-02 1.10E-02 2.64E-02 2.77E-02 3.66E-02 2.81E-02
3.63E-02 1.33E-01
-P-0000 res: 5.96E-02 5.64E-02 5.35E-02 2.35E-02 2.10E-02 1.59E-02
1.26E-02 3.54E-02
-P-0000 res: 2.64E-02 1.32E-01 4.09E-01 7.84E-01 3.14E-02 2.90E-01
1.27E-01 4.99E-02
-P-0000 res: 5.85E-01 1.72E-01 1.43E-01 6.48E-02 9.91E-02 1.99E-02
1.92E-01 9.05E-03
-P-0000 res: 2.07E-02 1.31E-02 1.68E-02 2.69E-03 1.51E-02
-P-0000 ene: -8.43E+00 -8.42E+00 -8.40E+00 -8.39E+00 -8.38E+00 -8.30E+00
-8.30E+00 -8.22E+00
-P-0000 ene: -8.21E+00 -8.17E+00 -8.10E+00 -8.04E+00 -8.00E+00 -7.99E+00
-7.98E+00 -7.96E+00
-P-0000 ene: -7.90E+00 -7.86E+00 -7.75E+00 -7.56E+00 -7.00E+00 -6.96E+00
-6.55E+00 -6.40E+00
-P-0000 ene: -6.30E+00 -6.22E+00 -6.18E+00 -6.17E+00 -6.16E+00 -5.91E+00
-5.90E+00 -5.89E+00
-P-0000 ene: -5.86E+00 -5.86E+00 -5.82E+00 -5.81E+00 -5.62E+00
-P-0000 vtowfk : number of one-way 3D ffts skipped in vtowfk until now =
0
-P-0000 eigenvalues (hartree) for 37 bands
-P-0000 after 2 non-SCF iterations with 4 CG line
minimizations
-P-0000 -8.4275E+00 -8.4191E+00 -8.3989E+00 -8.3876E+00 -8.3752E+00
-8.2986E+00
-P-0000 -8.2974E+00 -8.2209E+00 -8.2082E+00 -8.1719E+00 -8.1042E+00
-8.0439E+00
-P-0000 -7.9976E+00 -7.9891E+00 -7.9819E+00 -7.9564E+00 -7.8968E+00
-7.8597E+00
-P-0000 -7.7529E+00 -7.5610E+00 -6.9968E+00 -6.9601E+00 -6.5500E+00
-6.3957E+00
-P-0000 -6.2953E+00 -6.2183E+00 -6.1833E+00 -6.1720E+00 -6.1598E+00
-5.9081E+00
-P-0000 -5.9025E+00 -5.8877E+00 -5.8635E+00 -5.8593E+00 -5.8229E+00
-5.8138E+00
-P-0000 -5.6190E+00
,Min el dens= 0.0000E+00 el/bohr^3 at reduced coord. 0.0000 0.0000 0.0000
,Max el dens= 0.0000E+00 el/bohr^3 at reduced coord. 0.9907 0.9907 0.9907
ETOT 39 -28.921554708528 -1.036E-03 7.845E-01 3.170E-22 2.308E-03
4.454E+00
scprqt: <Vxc>= -2.3545461E-02 hartree
Pulay update with 7 previous iterations:
mixing of old trial potential : alpha(m:m-4)= 1.82 -1.20 0.494
-0.149 0.440E-01
ITER STEP NUMBER 40
vtorho : nnsclo_now= 1, note that nnsclo,dbl_nnsclo,istep= 0 0 40
-P-0000
-P-0000 Non-SCF iterations; k pt # 1 k= 0.00000 0.00000 0.00000 band
residuals:
-P-0000 res: 1.22E-02 1.09E-02 2.53E-02 2.75E-02 3.56E-02 2.62E-02
3.71E-02 1.30E-01
-P-0000 res: 6.06E-02 5.63E-02 5.32E-02 2.36E-02 2.08E-02 1.57E-02
1.25E-02 3.52E-02
-P-0000 res: 3.05E-02 1.11E-01 4.11E-01 7.78E-01 3.13E-02 2.86E-01
1.22E-01 4.94E-02
-P-0000 res: 5.79E-01 1.74E-01 6.98E-02 9.74E-02 1.43E-01 1.98E-02
1.92E-01 9.07E-03
-P-0000 res: 1.37E-02 2.03E-02 1.67E-02 2.69E-03 1.57E-02
-P-0000 ene: -8.43E+00 -8.42E+00 -8.40E+00 -8.39E+00 -8.38E+00 -8.30E+00
-8.29E+00 -8.22E+00
-P-0000 ene: -8.21E+00 -8.17E+00 -8.10E+00 -8.04E+00 -8.00E+00 -7.99E+00
-7.98E+00 -7.96E+00
-P-0000 ene: -7.90E+00 -7.86E+00 -7.75E+00 -7.57E+00 -7.00E+00 -6.96E+00
-6.55E+00 -6.40E+00
-P-0000 ene: -6.30E+00 -6.21E+00 -6.18E+00 -6.17E+00 -6.16E+00 -5.91E+00
-5.90E+00 -5.89E+00
-P-0000 ene: -5.86E+00 -5.86E+00 -5.82E+00 -5.81E+00 -5.61E+00
-P-0000 vtowfk : number of one-way 3D ffts skipped in vtowfk until now =
0
-P-0000 eigenvalues (hartree) for 37 bands
-P-0000 after 2 non-SCF iterations with 4 CG line
minimizations
-P-0000 -8.4276E+00 -8.4191E+00 -8.3995E+00 -8.3875E+00 -8.3760E+00
-8.3019E+00
-P-0000 -8.2945E+00 -8.2227E+00 -8.2081E+00 -8.1719E+00 -8.1047E+00
-8.0441E+00
-P-0000 -7.9973E+00 -7.9895E+00 -7.9817E+00 -7.9560E+00 -7.8997E+00
-7.8625E+00
-P-0000 -7.7547E+00 -7.5665E+00 -6.9968E+00 -6.9593E+00 -6.5509E+00
-6.3958E+00
-P-0000 -6.2981E+00 -6.2125E+00 -6.1823E+00 -6.1745E+00 -6.1587E+00
-5.9079E+00
-P-0000 -5.9024E+00 -5.8877E+00 -5.8616E+00 -5.8613E+00 -5.8233E+00
-5.8139E+00
-P-0000 -5.6082E+00
,Min el dens= 0.0000E+00 el/bohr^3 at reduced coord. 0.0000 0.0000 0.0000
,Max el dens= 0.0000E+00 el/bohr^3 at reduced coord. 0.9907 0.9907 0.9907
ETOT 40 -28.931761846869 -1.021E-02 7.785E-01 8.218E-23 9.372E-03
4.455E+00
scprqt: <Vxc>= -2.3545461E-02 hartree
Pulay update with 7 previous iterations:
mixing of old trial potential : alpha(m:m-4)= 1.64 -0.595 -0.179
0.233 -0.134
Cartesian components of stress tensor (hartree/bohr^3)
sigma(1 1)= -4.69469831E-03 sigma(3 2)= -4.89047828E-06
sigma(2 2)= -3.62584316E-03 sigma(3 1)= -5.44017092E-05
sigma(3 3)= -4.19378520E-03 sigma(2 1)= 1.26070673E-03
scprqt: WARNING -
nstep= 40 was not enough SCF cycles to converge;
maximum force difference= 9.372E-03 exceeds toldff= 5.000E-05
ioarr: writing density data
ioarr: file name is cdse8_1xo_TIM0_DEN
ioarr: data written to disk file cdse8_1xo_TIM0_DEN
Cartesian coordinates (bohr)
0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
5.07958382398277E+00 0.00000000000000E+00 0.00000000000000E+00
-1.22624328250834E+00 4.92934114841515E+00 0.00000000000000E+00
3.85334054147443E+00 4.92934114841515E+00 0.00000000000000E+00
0.00000000000000E+00 0.00000000000000E+00 5.07958382398277E+00
5.07958382398277E+00 0.00000000000000E+00 5.07958382398277E+00
-1.22624328250834E+00 4.92934114841515E+00 5.07958382398277E+00
3.85334054147443E+00 4.92934114841515E+00 5.07958382398277E+00
Velocities (bohr/(atomic time unit))
0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
Cartesian forces (hart/bohr); max,rms= 4.45537E+00 2.90495E+00 (free atoms)
-1.12907800543770E+00 -1.50501753202831E+00 -1.46378416862729E+00
4.45537457106564E+00 -3.50085451280777E+00 -3.85075326483052E+00
-4.44997974405996E+00 3.56122116676361E+00 -3.85496924050358E+00
1.04089770623106E+00 1.35866452662955E+00 -1.25664807627896E+00
-3.25311128773469E+00 -4.14051846603262E+00 3.92901200607365E+00
1.57504151806463E+00 -1.22666752198161E+00 1.25236581353724E+00
-1.50357816426685E+00 1.25287233889012E+00 1.30767180299675E+00
3.26443340613787E+00 4.20030000056703E+00 3.93710512763270E+00
At the end of Moldyn step 0, POT.En.= -2.89317618468688E+01 Ha.
KIN+POT.En.= -2.89317618468688E+01 Ha.
fconv : at Broyd/MD step 0, gradients have not converged yet.
max grad (force/stress) = 4.4554E+00 > tolmxf= 5.0000E-05 ha/bohr (free
atoms)
MOLDYN STEP NUMBER 1
------------------------------------------------------
iter Etot(hartree) deltaE(h) residm vres2 diffor maxfor
getcut: wavevector= 0.0000 0.0000 0.0000 ngfft= 108 108 108
ecut(hartree)= 35.022 => boxcut(ratio)= 2.02702
ewald : nr and ng are 3 and 15
invcb : BUG -
Fast computation of inverse cubic root failed.
Action : contact ABINIT group.
__________________________________________________________________________
----- Original Message ----
From: Anglade Pierre-Matthieu <anglade@gmail.com>
To: forum@abinit.org
Sent: Sunday, 11 May, 2008 1:30:39 AM
Subject: Re: [abinit-forum] Problem with abinip , linear algebra library
Hi,
Would you mind posting your input in order to help potential helpers ?
Would you mind, also, running the same job but with Abinit compiled
without optimization and with debug flags on ? If you don't, please
post the resulting error messages with your input.
regards
PMA
On Sat, May 10, 2008 at 8:18 AM, pratik dhuvad <pratik_8mar@yahoo.com> wrote:
>
> Dear ABINIT users..
> I am trying to build parallal verson of ABINIT on a
> workstation with couble cpu(Xeon x5450 Quad core). I have installed LAM. but
> i have not installed any linear algebra libraries.. when i made one run it
> stopped giving
> _________________________________________________________________________
> MOLDYN STEP NUMBER 1
> ------------------------------------------------------
>
> iter Etot(hartree) deltaE(h) residm vres2 diffor
> maxfor
>
> getcut: wavevector= 0.0000 0.0000 0.0000 ngfft= 108 108 108
> ecut(hartree)= 35.022 => boxcut(ratio)= 2.02702
>
> ewald : nr and ng are 3 and 15
>
> invcb : BUG -
> Fast computation of inverse cubic root failed.
> Action : contact ABINIT group.
>
> .Delivered 2 WARNINGs and 1 COMMENTs to log file.
> -P-0000
> -P-0000 leave_new : decision taken to exit ...
> -----------------------------------------------------------------------------
> One of the processes started by mpirun has exited with a nonzero exit
> code. This typically indicates that the process finished in error.
> If your process did not finish in error, be sure to include a "return
> 0" or "exit(0)" in your C code before exiting the application.
>
> PID 7076 failed on node n0 (127.0.0.1) with exit status 1.
> _______________________________________________________________________
>
> I am not getting which linear algebra library to be used.. Please suggest me
> something ...
> Thanks in advance
>
> -:Pratik Dhuvad
> Research student
> The M S University of Baroda
> India
>
> ________________________________
> From Chandigarh to Chennai - find friends all over India. Click here.
> ________________________________
> Connect with friends all over the world. Get Yahoo! India Messenger.
--
Pierre-Matthieu Anglade
- [abinit-forum] Problem with abinip , linear algebra library, pratik dhuvad, 05/10/2008
- Re: [abinit-forum] Problem with abinip , linear algebra library, Anglade Pierre-Matthieu, 05/10/2008
- <Possible follow-up(s)>
- Re: [abinit-forum] Problem with abinip , linear algebra library, pratik_8mar, 05/14/2008
- Re: [abinit-forum] Problem with abinip , linear algebra library, Anglade Pierre-Matthieu, 05/14/2008
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