Skip to Content.
Sympa Menu

forum - Re: [abinit-forum] problem with unit cell of Cristobalite

forum@abinit.org

Subject: The ABINIT Users Mailing List ( CLOSED )

List archive

Re: [abinit-forum] problem with unit cell of Cristobalite


Chronological Thread 
  • From: Andrey Chibisov <andreichibisov@yandex.ru>
  • To: forum@abinit.org
  • Subject: Re: [abinit-forum] problem with unit cell of Cristobalite
  • Date: Thu, 23 Oct 2008 08:56:56 +0400

Post my input file for beta Cristobalite:
ndtset 4

#Optimization of the lattice parameters
enunit 1
optcell 1
ionmov 3
tolmxf 5.0d-4
ntime 500
dilatmx 1.1
ecutsm 0.5

#Definition of the k-point grids
kptopt 1 # Option for the automatic generation of k points, taking
# into account the symmetry
nshiftk 1
shiftk 0.0 0.0 0.0

ngkpt1 2 2 2
ngkpt2 4 4 4
ngkpt3 6 6 6
ngkpt4 8 8 8

getwfk -1 # This is to speed up the calculation, by restarting
# from previous wavefunctions, transferred from the old
# to the new k-points.

#Definition of the unit cell
spgroup 227
acell 3*13.52856
angdeg 90 90 90
rprim 0.0 0.5 0.5 # FCC primitive vectors (to be scaled by acell)
0.5 0.0 0.5
0.5 0.5 0.0

#Definition of the atom types
ntypat 2 # There is only one type of atom
znucl 14 8
zion 4 6 # The keyword "znucl" refers to the atomic number of the
# possible type(s) of atom. The pseudopotential(s)
# mentioned in the "files" file must correspond
# to the type(s) of atom. Here, the only type is Silicon.


#Definition of the atoms
natom 2 # There are two atoms
typat 1 2 # 1=Si 2=O
xred
0.125 0.125 0.125 #Si
0.000 0.000 0.000 #O

#Definition of the planewave basis set
ecut 30.0 # Maximal kinetic energy cut-off, in Hartree

#Definition of the SCF procedure
nstep 500 # Maximal number of SCF cycles
toldfe 1.0d-6 # Will stop when, twice in a row, the difference
# between two consecutive evaluations of total energy
# differ by less than toldfe (in Hartree)

22.10.08, 10:56, "Anglade Pierre-Matthieu" <anglade@gmail.com>:

> Hi,
> Could you please post your input file ?
> Theoretically (and in practice (see test 24 in the v3 serie)) abinit
> can perform your calculation in spgroup 227 without problem. Thus, it
> could be quite helpful to see your input file in order to know what
> the problem could be.
> regards
> PMA
> On Wed, Oct 22, 2008 at 7:04 AM, Andrey Chibisov
> <andreichibisov@yandex.ru> wrote:
> > Can you help me with unit cell of Cristobalite?
> > Data for Cristobalite from site
> > http://rruff.geo.arizona.edu/AMS/amcsd.php (American Mineralogist Crystal
> > Structure Database) is:
> >
> > Title Cristobalite
> > Lattice type F
> > Space group name Fd-3m
> > Space group number 227
> > Setting number 1
> >
> > Lattice parameters
> > a b c alpha beta gamma
> > 7.16600 7.16600 7.16600 90.0000 90.0000 90.0000
> > Unit-cell volume = 367.985229
> > Structure parameters
> > x y z g B
> > 1 Si Si 0.12500 0.12500 0.12500 1.000 3.335
> > 2 O O 0.00000 0.00000 0.00000 1.000 7.146
> >
> > In the input abinit file I write:
> > spgroup 227
> > For the primitive vectors of the lattice form a FCC lattice:
> > rprim
> > 0.0 0.5 0.5
> > 0.5 0.0 0.5
> > 0.5 0.5 0.0
> > However the abinit gives out:
> > Unit cell is not primitive?
> > In what is my error?
> >
> > --
> > Andrey Chibisov.
> > Candidate of Science,
> > Structural Ceramics Laboratory
> > Institute of Geology and Nature Management
> > Far Eastern Branch of Russian Academy of Sciences
> >
> --
> Pierre-Matthieu Anglade

--
Andrey Chibisov.
Candidate of Science,
Structural Ceramics Laboratory
Institute of Geology and Nature Management
Far Eastern Branch of Russian Academy of Sciences

ndtset 4

#Optimization of the lattice parameters
enunit 1
optcell 1
ionmov 3
tolmxf 5.0d-4
ntime 500
dilatmx 1.1
ecutsm 0.5

#Definition of the k-point grids
kptopt 1 # Option for the automatic generation of k points, taking
# into account the symmetry
nshiftk 1
shiftk 0.0 0.0 0.0

ngkpt1 2 2 2
ngkpt2 4 4 4
ngkpt3 6 6 6
ngkpt4 8 8 8

getwfk -1 # This is to speed up the calculation, by restarting
# from previous wavefunctions, transferred from the old
# to the new k-points.

#Definition of the unit cell
spgroup 227
acell 3*13.52856
angdeg 90 90 90
rprim 0.0 0.5 0.5 # FCC primitive vectors (to be scaled by acell)
0.5 0.0 0.5
0.5 0.5 0.0

#Definition of the atom types
ntypat 2 # There is only one type of atom
znucl 14 8
zion 4 6 # The keyword "znucl" refers to the atomic number of the
# possible type(s) of atom. The pseudopotential(s)
# mentioned in the "files" file must correspond
# to the type(s) of atom. Here, the only type is Silicon.


#Definition of the atoms
natom 2 # There are two atoms
typat 1 2 # 1=Si 2=O
xred
0.125 0.125 0.125 #Si
0.000 0.000 0.000 #O

#Definition of the planewave basis set
ecut 30.0 # Maximal kinetic energy cut-off, in Hartree

#Definition of the SCF procedure
nstep 500 # Maximal number of SCF cycles
toldfe 1.0d-6 # Will stop when, twice in a row, the difference
# between two consecutive evaluations of total energy
# differ by less than toldfe (in Hartree)



Archive powered by MHonArc 2.6.15.

Top of Page