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- From: lan haiping <lanhaiping@gmail.com>
- To: forum@abinit.org
- Subject: Re: [abinit-forum] terminated run by a warning
- Date: Thu, 12 Feb 2009 04:11:05 +0800
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Hi,Julie
Please have a look at
http://www.abinit.org/Infos_v5.6/release_notes/release_notes.html
"
B.2 The convergence of the GW calculations with respect to the number of bands
has been improved dramatically, thanks to the extrapolar method,
described in Phys.Rev.B78, 085125 (2008).
This should results in a 3-5 speed up of GW calculations for realistic systems,
thanks to a large lowering of the number of unoccupied bands needed to obtain the same accuracy.
See the new input variables gwcomp and gwencomp, and the new
automatic tests v5#65, 69 and paral#V .
Work by Fabien Bruneval. Test v5#69 provided by Matteo Giantomassi.
"
But it seems not the same as you hope since this improvement is ascribed to convergence
on bands number for GW calculations.
Regards ,
On Thu, Feb 12, 2009 at 3:06 AM, Julie Smart <smart.julie@rocketmail.com> wrote:
Hello,
Thanks so much for replying me. I hope abinit developers would help me get rid of the bug.
A friend has informed me that there's a good way to reduce the volume of the k-points and the nband by using the method in the following paper: PHYSICAL REVIEW B 78, 085125 ͑2008͒ in calcuuulating the imaginary part of dielectric function.
If you know anything about this method, will you kindly share with me?
Thanks for your kind directions to the new variables.
Regards,
Julie
From: Anglade Pierre-Matthieu <anglade@gmail.com>
To: forum@abinit.org
Sent: Wednesday, February 11, 2009 11:30:22 PM
Subject: Re: [abinit-forum] terminated run by a warning
Hi,
Unfortunately I can not explain what is going on with your case ...
However, the warnings you get seem not related to the error encountered by abinip with your case. When Abinit is run in parallel, the error messages and the "real" logs are written to log files, one per process. If I am correct (since i have modified a little bit you input, not run the same version of abinit, unlikely used the same number of processors), in you case the real error message is of the following kind :"""
rwwf : BUG -
Reading option of rwwf. One should have npw=np
w1
However, npw= 6868, and npw1= 6820.
Action : contact ABINIT group.
rwwf : BUG -
Reading option of rwwf. One should have npw=npw1
However, npw= 6851, and npw1= 6820.
Action : contact ABINIT group.
rwwf : BUG -
Reading option of rwwf. One should have npw=npw1
However, npw= 6863, and npw1= 6820.
Action : contact ABINIT group.
...
"""
Each process compute its own number of plane wave and all of them are differents. Does anyone knows this bug already ?
By the way, do you know you could shorten quite a bit the SCF run by using iprcel1 48, iscf1 7, diecut1 1 and nline1 9 ?
regards
PMAOn Wed, Feb 11, 2009 at 10:04 AM, Julie Smart <smart.julie@rocketmail.com> wrote:
Hello,
I have posted the following email once a few days ago, sorry me to resend it, but since I need to know the reason, I post it again.
I have a problem calculating the imaginary part of dielectric function. I receive a warning in the log that stops me in the second NSC loop, please find it in the enclosed.
I have increased the nband by adding the frequency/energy I needed, but I do not know why I am receiving such a stopping warning:
hdr_check: WARNING -
-P-0000 k pt num 1 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 2 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 3 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 4 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 5 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 6 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 7 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 8 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 9 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 10 input nband= 44 not equal disk file nband= 22
-P-0000
-P-0000 hdr_check: WARNING -
-P-0000 k pt num 11 input nband= 44 not equal disk file nband= 22
-P-0000 inwffil about to open unit 11 for file=t1x_WF1_P-0000
-P-0000 wfconv: 22 bands initialized randomly with npw= 6820, for ikpt= 1
-P-0000 wfconv: 22 bands initialized randomly with npw= 6854, for ikpt= 2
-P-0000 wfconv: 22 bands initialized randomly with npw= 6868, for ikpt= 3
-P-0000 wfconv: 22 bands initialized randomly with npw= 6873, for ikpt= 4
-P-0000 wfconv: 22 bands initialized randomly with npw= 6872, for ikpt= 5
-P-0000 wfconv: 22 bands initialized randomly with npw= 6850, for ikpt= 6
-P-0000 wfconv: 22 bands initialized randomly with npw= 6844, for ikpt= 7
-P-0000 wfconv: 22 bands initialized randomly with npw= 6856, for ikpt= 8
-P-0000 wfconv: 22 bands initialized randomly with npw= 6869, for ikpt= 9
-P-0000 wfconv: 22 bands initialized randomly with npw= 6854, for ikpt= 10
-P-0000 wfconv: 22 bands initialized randomly with npw= 6845, for ikpt= 11
-P-0000 wfconv: 22 bands initialized randomly with npw= 6841, for ikpt= 12
-P-0000 wfconv: 22 bands initialized randomly with npw= 6863, for ikpt= 13
-P-0000 wfconv: 22 bands initialized randomly with npw= 6866, for ikpt= 14
-P-0000 wfconv: 22 bands initialized randomly with npw= 6850, for ikpt= 15
-P-0000 wfconv: 22 bands initialized randomly with npw= 6848, for ikpt= 16
-P-0000 wfconv: 22 bands initialized randomly with npw= 6842, for ikpt= 17
-P-0000 wfconv: 22 bands initialized randomly with npw= 6852, for ikpt= 18
-P-0000 wfconv: 22 bands initialized randomly with npw= 6837, for ikpt= 19
-P-0000 leave_test : synchronization done...
-P-0000 leave_test : exiting...
STOP 1
STOP 1
STOP 1
STOP 1
the input is:
ndtset 6
#First dataset : SC run with kpoints in the IBZ
iscf1 3
nband1 22
nstep1 500
kptopt1 1
nbdbuf1 0
prtden1 1 getden1 0 getwfk1 0
#Second dataset : NSC run with large number of bands, and points in the IBZ
iscf2 -2
nband2 44
nstep2 500
kptopt2 1
getwfk2 1 getden2 1
#Third dataset : NSC run with large number of bands, and points in the the full BZ
iscf3 -2
nband3 44
nstep3 500
kptopt3 2
getwfk3 2 getden3 1
#Fourth dataset : ddk response function along axis 1
iscf4 -3
nband4 44
nstep4 1 nline4 0
kptopt4 2
nqpt4 1 qpt4 0.0d0 0.0d0 0.0d0
rfdir4 1 0 0
rfelfd4 2
getwfk4 3
#Fifth dataset : ddk response function along axis 2
iscf5 -3
nband5 44
nstep5 1 nline5 0
kptopt5 2
nqpt5 1 qpt5 0.0d0 0.0d0 0.0d0
rfdir5 0 1 0
rfelfd5 2
getwfk5 3
#Sixth dataset : ddk response function along axis 3
iscf6 -3
nband6 44
nstep6 1 nline6 0
kptopt6 2
nqpt6 1 qpt6 0.0d0 0.0d0 0.0d0
rfdir6 0 0 1
rfelfd6 2
getwfk6 3
#Data common to all datasets
nshiftk 1
shiftk 0.0 0.0 0.5
ngkpt 12 12 8
acell 6.0445081230E+00 6.0445081230E+00 9.7638554549E+00 Bohr
amu 65.39 15.9994
iprcel 45
ecut 60
iscf 3
ixc 3
natom 4 nbdbuf 2
ntypat 2
angdeg 90 90 120
xred 3.3333333333E-01 6.6666666667E-01 -3.3300232113E-16
6.6666666667E-01 3.3333333333E-01 5.0000000000E-01
3.3333333333E-01 6.6666666667E-01 3.7863682474E-01
6.6666666667E-01 3.3333333333E-01 8.7863682474E-01
tnons 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.5000000
0..0000000 0.0000000 0.5000000 0.0000000 0.0000000 0.0000000
0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.5000000
0.0000000 0.0000000 0.5000000 0.0000000 0.0000000 0.0000000
0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.5000000
0.0000000 0.0000000 0.5000000 0.0000000 0.0000000 0.0000000
typat 1 1 2 2 tolwfr 1.e-18
znucl 30 8
mkmem 0
I'd be grateful to have your kind reply soon.
Regards,
Julie
--
Pierre-Matthieu Anglade
--
Hai-Ping Lan
Department of Electronics ,
Peking University , Bejing, 100871
lanhaiping@gmail.com, hplan@pku.edu.cn
- [abinit-forum] terminated run by a warning, Julie Smart, 02/11/2009
- Re: [abinit-forum] terminated run by a warning, Anglade Pierre-Matthieu, 02/11/2009
- Re: [abinit-forum] terminated run by a warning, Julie Smart, 02/11/2009
- Re: [abinit-forum] terminated run by a warning, lan haiping, 02/11/2009
- Re: [abinit-forum] terminated run by a warning, Anglade Pierre-Matthieu, 02/12/2009
- Re: [abinit-forum] terminated run by a warning, Julie Smart, 02/12/2009
- Re: [abinit-forum] terminated run by a warning, Anglade Pierre-Matthieu, 02/12/2009
- Re: [abinit-forum] terminated run by a warning, Julie Smart, 02/14/2009
- Re: [abinit-forum] terminated run by a warning, lan haiping, 02/11/2009
- Re: [abinit-forum] terminated run by a warning, Julie Smart, 02/11/2009
- Re: [abinit-forum] terminated run by a warning, Anglade Pierre-Matthieu, 02/11/2009
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