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[abinit-forum] elphon - Transport memory requirements


Chronological Thread 
  • From: Marty Blaber <martin.blaber@gmail.com>
  • To: forum@abinit.org
  • Subject: [abinit-forum] elphon - Transport memory requirements
  • Date: Thu, 26 Mar 2009 15:43:15 +1100
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Hi,

I've been trying to perform an electron-phonon transport calculation
on a 2 atom CsCl metallic system on a 16^3 kptrlatt with 35 qpoints.
To perform the transport calculation we must set the tkeepbands to 1
to keep all of the gkk bands in memory. Is this really necessary? My
calculations need ~100GB of memory (As I have only 32 GB at the
moment, the system pages awfully.)
Is there a solution to this problem, my system isn't that big... am I
missing something obvious/asking a stupid question?
My anddb/abinit inputs are below.

Any advice would be appreciated.

Cheers,
Marty

p.s. Using abinip 5.6.4 for GS + Pert, tried anaddb 564 and 573

############################################################
ANADDB.IN
############################################################
# turn on calculation of the electron-phonon quantities
elphflag 1
ifltransport 1
tkeepbands 1
doscalprod 1
#gkqwrite 1

# Path in reciprocal space along which the phonon linewidths
# and band structure will be calculated
nqpath 1
qpath
0.0 0.0 0.0
0.0 1/2 0.0
0.0 1 0.0
0.0 1/2 0.0
1/2 1/2 0.0
0.0 1/2 1/2
1/2 1/2 1/2
1/2 0.0 0.0

# Irrelevant
mustar 0.136

# Minimalistic qpoint grid
ngqpt 8 8 8
nqshft 1
q1shft 0.0 0.0 0.0

nshiftk 1
shiftk 0.0 0.0 0.0
kptrlatt 16 0 0 0 16 0 0 0 16
telphint 1

# impose acoustic sum rule in a symmetric way
asr 2
dipdip 1

# bravais lattice necessary
brav 1

#
ifcflag 1
ifcana 1
# ifc for all atoms?
natifc 0
atifc 1 2 3

# print dielectric matrix with freq dependence
dieflag 0

# print out eigenvectors and symmetrize dyn matrix
eivec 1

#Wavevector list number 1 (Reduced coordinates and normalization factor)
nph1l 1
qph1l
0.0000 0.0000 0.0000 1

symdynmat 0

############################################################
/ANADDB.IN
############################################################


############################################################
ABINIT.IN
############################################################
###########################################################
# Welcome to Marty Blaber's Abinit - EP Coupling input
# file generator
# Usage: python ab-build-ep-calc.py {qpoint file}
###########################################################
# File = qp.list
# nLines = 17
# headerLines = 12
# nqp = 5

# File built on 2009-03-23 10:43:29.835767 by Martin G Blaber's
abinit EP coupling input file generator

#+**********************+
#| DATASETS |
#+**********************+

# Number of datasets = 36
#ndtset 35
#jdtset 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
23 24 25 26 27 28 29 30 31 32 33 34 35 36
#ndtset 19
#jdtset 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36
ndtset 6
jdtset 31 32 33 34 35 36

#DATASET 1 - Ground State
iscf 3
kptopt1 3
tolwfr1 1.0d-18
prtden1 1
nline1 8

#ds = 2 qp(0) =0.375 0.25 0.0
iscf2 -3 tolwfr2 1.0d-14 getden2 1
kptopt2 3 nqpt2 1 qpt2 0.375 0.25 0.0
rfatpol3 1 1 rfdir3 1 0 0 rfphon3 1 tolvrs3 1.0e-5 getwfk3 1
getwfq3 2 kptopt3 3 nqpt3 1 qpt3 0.375 0.25 0.0
rfatpol4 1 1 rfdir4 0 1 0 rfphon4 1 tolvrs4 1.0e-5 getwfk4 1
getwfq4 2 kptopt4 3 nqpt4 1 qpt4 0.375 0.25 0.0
rfatpol5 1 1 rfdir5 0 0 1 rfphon5 1 tolvrs5 1.0e-5 getwfk5 1
getwfq5 2 kptopt5 3 nqpt5 1 qpt5 0.375 0.25 0.0
rfatpol6 2 2 rfdir6 1 0 0 rfphon6 1 tolvrs6 1.0e-5 getwfk6 1
getwfq6 2 kptopt6 3 nqpt6 1 qpt6 0.375 0.25 0.0
rfatpol7 2 2 rfdir7 0 1 0 rfphon7 1 tolvrs7 1.0e-5 getwfk7 1
getwfq7 2 kptopt7 3 nqpt7 1 qpt7 0.375 0.25 0.0
rfatpol8 2 2 rfdir8 0 0 1 rfphon8 1 tolvrs8 1.0e-5 getwfk8 1
getwfq8 2 kptopt8 3 nqpt8 1 qpt8 0.375 0.25 0.0

#ds = 9 qp(1) =0.5 0.25 0.0
iscf9 -3 tolwfr9 1.0d-14 getden9 1
kptopt9 3 nqpt9 1 qpt9 0.5 0.25 0.0
rfatpol10 1 1 rfdir10 1 0 0 rfphon10 1 tolvrs10 1.0e-5 getwfk10
1 getwfq10 9 kptopt10 3 nqpt10 1 qpt10 0.5 0.25 0.0
rfatpol11 1 1 rfdir11 0 1 0 rfphon11 1 tolvrs11 1.0e-5 getwfk11
1 getwfq11 9 kptopt11 3 nqpt11 1 qpt11 0.5 0.25 0.0
rfatpol12 1 1 rfdir12 0 0 1 rfphon12 1 tolvrs12 1.0e-5 getwfk12
1 getwfq12 9 kptopt12 3 nqpt12 1 qpt12 0.5 0.25 0.0
rfatpol13 2 2 rfdir13 1 0 0 rfphon13 1 tolvrs13 1.0e-5 getwfk13
1 getwfq13 9 kptopt13 3 nqpt13 1 qpt13 0.5 0.25 0.0
rfatpol14 2 2 rfdir14 0 1 0 rfphon14 1 tolvrs14 1.0e-5 getwfk14
1 getwfq14 9 kptopt14 3 nqpt14 1 qpt14 0.5 0.25 0.0
rfatpol15 2 2 rfdir15 0 0 1 rfphon15 1 tolvrs15 1.0e-5 getwfk15
1 getwfq15 9 kptopt15 3 nqpt15 1 qpt15 0.5 0.25 0.0

#ds = 16 qp(2) =0.375 0.375 0.0
iscf16 -3 tolwfr16 1.0d-14 getden16 1
kptopt16 3 nqpt16 1 qpt16 0.375 0.375 0.0
rfatpol17 1 1 rfdir17 1 0 0 rfphon17 1 tolvrs17 1.0e-5 getwfk17
1 getwfq17 16 kptopt17 3 nqpt17 1 qpt17 0.375 0.375 0.0
rfatpol18 1 1 rfdir18 0 1 0 rfphon18 1 tolvrs18 1.0e-5 getwfk18
1 getwfq18 16 kptopt18 3 nqpt18 1 qpt18 0.375 0.375 0.0
rfatpol19 1 1 rfdir19 0 0 1 rfphon19 1 tolvrs19 1.0e-5 getwfk19
1 getwfq19 16 kptopt19 3 nqpt19 1 qpt19 0.375 0.375 0.0
rfatpol20 2 2 rfdir20 1 0 0 rfphon20 1 tolvrs20 1.0e-5 getwfk20
1 getwfq20 16 kptopt20 3 nqpt20 1 qpt20 0.375 0.375 0.0
rfatpol21 2 2 rfdir21 0 1 0 rfphon21 1 tolvrs21 1.0e-5 getwfk21
1 getwfq21 16 kptopt21 3 nqpt21 1 qpt21 0.375 0.375 0.0
rfatpol22 2 2 rfdir22 0 0 1 rfphon22 1 tolvrs22 1.0e-5 getwfk22
1 getwfq22 16 kptopt22 3 nqpt22 1 qpt22 0.375 0.375 0.0

#ds = 23 qp(3) =0.5 0.375 0.0
iscf23 -3 tolwfr23 1.0d-14 getden23 1
kptopt23 3 nqpt23 1 qpt23 0.5 0.375 0.0
rfatpol24 1 1 rfdir24 1 0 0 rfphon24 1 tolvrs24 1.0e-5 getwfk24
1 getwfq24 23 kptopt24 3 nqpt24 1 qpt24 0.5 0.375 0.0
rfatpol25 1 1 rfdir25 0 1 0 rfphon25 1 tolvrs25 1.0e-5 getwfk25
1 getwfq25 23 kptopt25 3 nqpt25 1 qpt25 0.5 0.375 0.0
rfatpol26 1 1 rfdir26 0 0 1 rfphon26 1 tolvrs26 1.0e-5 getwfk26
1 getwfq26 23 kptopt26 3 nqpt26 1 qpt26 0.5 0.375 0.0
rfatpol27 2 2 rfdir27 1 0 0 rfphon27 1 tolvrs27 1.0e-5 getwfk27
1 getwfq27 23 kptopt27 3 nqpt27 1 qpt27 0.5 0.375 0.0
rfatpol28 2 2 rfdir28 0 1 0 rfphon28 1 tolvrs28 1.0e-5 getwfk28
1 getwfq28 23 kptopt28 3 nqpt28 1 qpt28 0.5 0.375 0.0
rfatpol29 2 2 rfdir29 0 0 1 rfphon29 1 tolvrs29 1.0e-5 getwfk29
1 getwfq29 23 kptopt29 3 nqpt29 1 qpt29 0.5 0.375 0.0

#ds = 30 qp(4) =0.5 0.5 0.0
iscf30 -3 tolwfr30 1.0d-14 getden30 1
kptopt30 3 nqpt30 1 qpt30 0.5 0.5 0.0
rfatpol31 1 1 rfdir31 1 0 0 rfphon31 1 tolvrs31 1.0e-5 getwfk31
1 getwfq31 30 kptopt31 3 nqpt31 1 qpt31 0.5 0.5 0.0
rfatpol32 1 1 rfdir32 0 1 0 rfphon32 1 tolvrs32 1.0e-5 getwfk32
1 getwfq32 30 kptopt32 3 nqpt32 1 qpt32 0.5 0.5 0.0
rfatpol33 1 1 rfdir33 0 0 1 rfphon33 1 tolvrs33 1.0e-5 getwfk33
1 getwfq33 30 kptopt33 3 nqpt33 1 qpt33 0.5 0.5 0.0
rfatpol34 2 2 rfdir34 1 0 0 rfphon34 1 tolvrs34 1.0e-5 getwfk34
1 getwfq34 30 kptopt34 3 nqpt34 1 qpt34 0.5 0.5 0.0
rfatpol35 2 2 rfdir35 0 1 0 rfphon35 1 tolvrs35 1.0e-5 getwfk35
1 getwfq35 30 kptopt35 3 nqpt35 1 qpt35 0.5 0.5 0.0
rfatpol36 2 2 rfdir36 0 0 1 rfphon36 1 tolvrs36 1.0e-5 getwfk36
1 getwfq36 30 kptopt36 3 nqpt36 1 qpt36 0.5 0.5 0.0

# Done
#+----------------------+
#| Constants |
#+----------------------+

#### Grid and Smearing ####
occopt 4 # 4 = Metallic cold smear
tsmear 0.001
ecut 28.0
nband 8

#### K-POINTS ####
#kptopt 3 # 3 = No Sym
nshiftk 1
shiftk 0.0 0.0 0.0
kptrlatt 16 0 0 0 16 0 0 0 16

#### SCF ####
#iscf 3
nstep 1000
#toldfe 1.0d-8 # Energy
#tolwfr 1e-18


#### CELL ####
acell 3*6.4474824015
rprim 1.0 0.0 0.0 # SC primitive vectors
0.0 1.0 0.0
0.0 0.0 1.0

#### ATOMS ####
ixc 7 # 7 = PW92
ntypat 2
znucl 11 47
natom 2
typat 1 2
xred 0.0 0.0 0.0
0.5 0.5 0.5




############################################################
/ABINIT.IN
############################################################



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