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[abinit-forum] Is the GEO file output wrong?


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  • From: Rob <spamrefuse@yahoo.com>
  • To: abinit <forum@abinit.org>
  • Subject: [abinit-forum] Is the GEO file output wrong?
  • Date: Tue, 9 Jun 2009 01:12:52 -0700 (PDT)
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Hi,

I tried to simulate a TaON crystal, by putting in the three atoms in
the input file. I make GEO output files, which only lists three Ta atoms:

----------------------------------------------
[...snip...]
Atom list Reduced coordinates Cartesian coordinates (bohr)
Ta(1) 0.29197 0.04477 0.21486 2.38073 0.42442 2.06741
Ta(2) 0.06620 0.32730 0.34430 0.05820 3.10282 3.31290
Ta(3) 0.44470 0.75570 0.48080 3.37592 7.16406 4.62633

XMOL data : natom, followed by cartesian coordinates in Angstrom

3

Ta 1.25983 0.22459 1.09403
Ta 0.03080 1.64194 1.75311
Ta 1.78646 3.79106 2.44815
[...snip...]
----------------------------------------------------


Is this a bug in the GEO output file? This is version 5.7.3 of ABINIT.
I have the following input files:

# TaON.in:
prtgeo 1
acell 4.94941 5.01662 5.16430 angstrom
angdeg 90 99.6107 90 # alpha, beta, gamma angles
ntypat 3 # There is only three types of atom: Ta - O - N
znucl 73 8 7 # Ta, O, and N.

natom 3 # There are three atoms in the unit cell
typat 1 1 1 # One of each type as specified in znucl

# This keyword indicates that the location of the atoms will follow
xred # one triplet of numbers for each atom
0.29197 0.04477 0.21486 # Relative coordinates of atom 1
0.0662 0.3273 0.3443 # Relative coordinates of atom 2
0.4447 0.7557 0.4808 # Relative coordinates of atom 3

ecut 200 eV # Maximal plane-wave kinetic energy cut-off

nkpt 15
ngkpt 3 3 3

nstep 25 # Maximal number of SCF cycles
toldfe 1.0d-6
diemac 2.0


# TaON.files:
TaON.in
TaON.out
TaONi
TaONo
TaONx
73-Ta.GGA.fhi
08-O.GGA.fhi
07-N.GGA.fhi


Thank you,
Rob.






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