forum@abinit.org
Subject: The ABINIT Users Mailing List ( CLOSED )
List archive
- From: <asorini@gmail.com>
- To: forum@abinit.org
- Subject: [abinit-forum] Supercell SEG fault
- Date: Mon, 27 Jul 2009 21:00:07 +0200 (CEST)
Hi Forum,
I'm trying to run a supercell calculation for antimony (Sb) using the
conventional cell. I've been able to run the calculation and produce
reasonable
DOS using the primative cell, but I would like to add a vacuum layer and so as
a first step I want to run the conventional cell. But, when I run the
following
input file I get a seg fault. I've also attached the relevant part of the log
file below. Can anyone help me out with this? Thanks in advance. Cheers,
Adam
input file:
chkprim 0
acell 1.0 1.0 1.0 angstrom
rprim
3.7301777950 -2.1536191541 0.0000000000
0.0000000000 4.3072383082 0.0000000000
0.0000000000 0.0000000000 11.2753955350
natom 6
ntypat 1
znucl 51
#typat 1
typat 1 1 1 1 1 1
xangst
-0.0000000122 -0.0000000217 3.0037653328
1.2433925863 2.1536191324 6.7622305113
2.4867851848 -0.0000000217 10.5206956899
0.0000000122 -0.0000000217 -3.0037653328
1.2433926107 2.1536191324 0.7546998457
2.4867852092 -0.0000000217 4.5131650242
prtdos 2
# for metals...
# it's a semimetal...
occopt 3 #F.D. smearing--tsmear is physical temp
tsmear 0.01
fband 1.8
ecut 30
ixc 11 #PBE GGA
#kgrid
kptopt 1 # Option for the automatic generation of k points, taking
# symm into account
ngkpt 8 8 8
nshiftk 1
shiftk 0.5 0.5 0.5
nstep 300 # Maximal number of SCF cycles, 30 is default
toldfe 1.0d-7 # Will stop when, twice in a row, the difference
log file:
...
...
wfconv: 26 bands initialized randomly with npw= 9598, for ikpt= 33
wfconv: 26 bands initialized randomly with npw= 9614, for ikpt= 34
wfconv: 26 bands initialized randomly with npw= 9597, for ikpt= 35
wfconv: 26 bands initialized randomly with npw= 9584, for ikpt= 36
wfconv: 26 bands initialized randomly with npw= 9612, for ikpt= 37
wfconv: 26 bands initialized randomly with npw= 9630, for ikpt= 38
wfconv: 26 bands initialized randomly with npw= 9631, for ikpt= 39
wfconv: 26 bands initialized randomly with npw= 9592, for ikpt= 40
wfconv: 26 bands initialized randomly with npw= 9573, for ikpt= 41
wfconv: 26 bands initialized randomly with npw= 9592, for ikpt= 42
wfconv: 26 bands initialized randomly with npw= 9577, for ikpt= 43
wfconv: 26 bands initialized randomly with npw= 9597, for ikpt= 44
wfconv: 26 bands initialized randomly with npw= 9630, for ikpt= 45
wfconv: 26 bands initialized randomly with npw= 9625, for ikpt= 46
wfconv: 26 bands initialized randomly with npw= 9622, for ikpt= 47
wfconv: 26 bands initialized randomly with npw= 9596, for ikpt= 48
wfconv: 26 bands initialized randomly with npw= 9564, for ikpt= 49
wfconv: 26 bands initialized randomly with npw= 9559, for ikpt= 50
setup2: Arith. and geom. avg. npw (full set) are 9594.305 9594.283
symatm: atom number 1 is reached starting at atom
1 3 2 4 5 6 1 3 2 4 5 6 1 3 2 4 5 6 1 3 2 4 5 6
symatm: atom number 2 is reached starting at atom
2 1 3 6 4 5 2 1 3 6 4 5 2 1 3 6 4 5 2 1 3 6 4 5
symatm: atom number 3 is reached starting at atom
3 2 1 5 6 4 3 2 1 5 6 4 3 2 1 5 6 4 3 2 1 5 6 4
symatm: atom number 4 is reached starting at atom
4 6 5 1 2 3 4 6 5 1 2 3 4 6 5 1 2 3 4 6 5 1 2 3
symatm: atom number 5 is reached starting at atom
5 4 6 3 1 2 5 4 6 3 1 2 5 4 6 3 1 2 5 4 6 3 1 2
symatm: atom number 6 is reached starting at atom
6 5 4 2 3 1 6 5 4 2 3 1 6 5 4 2 3 1 6 5 4 2 3 1
forrtl: severe (174): SIGSEGV, segmentation fault occurred
- [abinit-forum] Supercell SEG fault, asorini, 07/27/2009
Archive powered by MHonArc 2.6.16.