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- From: "Matteo Giantomassi" <Matteo.Giantomassi@uclouvain.be>
- To: forum@abinit.org
- Subject: Re: [abinit-forum] memory allocation issues
- Date: Fri, 19 Feb 2010 21:41:24 +0100
- Importance: Normal
> Hello,
>
> I am trying to do a structural relaxation of a 2*2*2 KNbO3 supercell . The
> problem is that it doesn't find enough memory and it exits. I was
> wondering
> if there is a way to get around this problem ? Waiting for your inputs.
>
> Thanks for your time,
>
> Mohua
>
> snippets of the output file:
Dear Mohua,
The standard k-point parallelism is of no help to reduce
the memory requirements since your system has only one k-point,
You might try the band-fft parallelism.
Please have a look at the paral_kgb input variable described here
http://www.abinit.org/documentation/helpfiles/for-v5.8/input_variables/varpar.html#paral_kgb
Best Regards
Matteo Giantomassi
>
> memory : analysis of memory needs
> ================================================================================
> Values of the parameters that define the memory need of the present run
> intxc = 0 ionmov = 2 iscf = 7 ixc =
> 11
> lmnmax = 4 lnmax = 4 mband = 330 mffmem =
> 1
> P mgfft = 216 mkmem = 1 mpssoang= 4 mpw =
> 392872
> mqgrid = 3001 natom = 80 nfft = 6718464 nkpt =
> 1
> nloalg = 4 nspden = 1 nspinor = 1 nsppol =
> 1
> nsym = 64 n1xccc = 0 ntypat = 3 occopt =
> 1
> ================================================================================
> P This job should need less than 4141.509 Mbytes of
> memory.
> Rough estimation (10% accuracy) of disk space for files :
> WF disk file : 1978.270 Mbytes ; DEN or POT disk file : 51.260
> Mbytes.
> ================================================================================
>
> Biggest array : cg(disk), with 1978.2698 MBytes.
> -P-0000 leave_test : synchronization done...
> memana : allocated an array of 1978.270 Mbytes, for testing purposes.
> -P-0000
> -P-0000 memana : ERROR -
> -P-0000 Test failed to allocate 4141.509 Mbytes
> -P-0000 It is not worth to continue
> -P-0000 Action : modify input variable to fit the available memory.
> -P-0000 or increase limit on available memory.
> -P-0000
> -P-0000 leave_new : decision taken to exit ...
> -P-0000 leave_new : synchronization done...
> -P-0000 leave_new : exiting...
> abinip(78007) malloc: *** mmap(size=542900224) failed (error code=12)
> *** error: can't allocate region
> *** set a breakpoint in malloc_error_break to debug
> abinip(78007) malloc: *** mmap(size=542900224) failed (error code=12)
> *** error: can't allocate region
> *** set a breakpoint in malloc_error_break to debug
> abinip(78007) malloc: *** mmap(size=542900224) failed (error code=12)
> *** error: can't allocate region
>
- [abinit-forum] memory allocation issues, Mohua Bhattacharya, 02/19/2010
- Re: [abinit-forum] memory allocation issues, Matteo Giantomassi, 02/19/2010
- Re: [abinit-forum] memory allocation issues, Mohua Bhattacharya, 02/20/2010
- Re: [abinit-forum] memory allocation issues, Matteo Giantomassi, 02/19/2010
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