The ABINIT Users Mailing List ( CLOSED )

["QY ZML" <zmq.lyao@gmail.com>]

 

Thanks for your reply.

1) Which compiler are you using ?

 

       My compiler is PGI6.2

2) can you try the following
  rm src/main/*.o `find src -name '*.a'`
  make

 

     I have try it
no .o file in the src/main
"find src -name '*.a'" list many .a files.
however the make command shows the following error:
...
Making all in main
make[3]: Entering directory `/home/qzm/abinit-src/abinit- 5.2.4/src/main'
/home/qzm/bin/pgi/linux86/6.2/bin/pgcc  -O3    -o abinis   ../../src/11drive/lib11drive.a ../../src/08seqpar/lib08seqpars.a ../../src/07suscep/lib07suscep.a ../../src/06response/lib06response.a ../../src/06geomoptim/lib06geomoptim.a ../../src/05gw/lib05gw.a ../../src/05common/lib05common.a ../../src/04rsprc/lib04rsprc.a ../../src/04occeig/lib04occeig.a ../../src/04iowfdenpot/lib04iowfdenpot.a ../../src/04rsprc/lib04rsprc.a ../../src/04wfs/lib04wfs.a ../../src/03ionetcdf/lib03ionetcdf.a ../../src/03iovars/lib03iovars.a ../../src/03paw/lib03paw.a ../../src/03recipspace/lib03recipspace.a ../../src/03xc/lib03xc.a ../../src/03xml/lib03xml.a ../../src/03nonlocal/lib03nonlocal.a ../../src/02poisson/lib02poisson.a ../../src/02nlstrain/lib02nlstrain.a ../../src/02ffts/lib02ffts.a ../../src/02psp/lib02psp.a ../../src/02poisson/lib02poisson.a ../../src/02geometry/lib02geometry.a ../../src/02parser/lib02parser.a ../../src/02spacepar/l! ib02spacepars.a ../../src/lib01fftnew/liblib01fftnews.a ../../src/01contract/lib01contract.a ../../src/01managempi/lib01managempis.a ../../src/01util/lib01util.a ../../src/01cg/lib01cg.a ../../src/00basis/lib00basis.a ../../src/defs/libdefs.a -L../../lib/numeric -lnumeric -L../../lib/numericf90 -lnumericf90 -L../../lib/linalg -llinalg    -L/home/qzm/bin/pgi/linux86/6.2/lib -L/usr/lib -L/usr/lib/gcc-lib/i386-redhat-linux/3.3.3/ -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lpgsse1 -lpgsse2 -lnspgc -lpgc -lm
/usr/lib/crt1.o(.text+0x18): In function `_start':
: undefined reference to `main'
make[3]: *** [abinis] ′error 2
make[3]: Leaving directory `/home/qzm/abinit-src/abinit-5.2.4/src/main'
make[2]: *** [all-recursive] ′error 1
make[2]: Leaving directory `/home/qzm/abinit-src/abinit-5.2.4/src'
make[1]: *** [all-recursive] ′error 1
make[1]: Leaving directory `/home/qzm/abinit-src/abinit-5.2.4'
---------------------------------- 

The .ac file is as following:

#
# Generic config file for ABINIT (documented template)
#
# After editing this file to suit your needs, you may save it as
# "~/.abinit/build/<hostname>.ac" to save these parameters as per-user
# defaults. Just replace "<hostname>" by the name of your machine,
# excluding the domain name.
#
# Example: if your machine is called "myhost.mydomain", you will save
#          this file as "~/.abinit/build/myhost.ac".
#
# You may put this file at the top level of an ABINIT source tree as well,
# in which case its definitions will apply to this particular tree only.
#
# Hint: If you do not know the name of your machine, just type "hostname".
#

#
# IMPORTANT NOTES
#
# 1. It may happen that this file is outdated. In such a case, the best is
#    to refer to the command-line options of the "configure" script.
#
#    To have a complete list of these options, just type "./configure --help"
#    from the top source directory of ABINIT.
#
# 2. Setting CPPFLAGS, CFLAGS, CXXFLAGS, or FCFLAGS manually is not
#    recommended and will override any other mechanism involved in
#    their configuration. Use at your own risks.
#
#    A more gentle way to do is to use the "--with-*-optflags" command-line
#    options of the "configure" script. See below for details.
#
# 3. Do not forget to remove the leading "#" on a line when you customize
#    an option.
#

# ---------------------------------------------------------------------------- #
# Installation                                                                 #
# ---------------------------------------------------------------------------- #

# Select which type of installation will be performed by "make install"
# (default is prefix)
#
# Available methods:
#
#  * prefix: use specified prefix
#  * debian: use Debian/Ubuntu rules
#  * rpm   : use Redhat/Fedora/Mandriva rules
#
# Note: the default is fine for most installations
#
with_install_type="prefix"

# Where to install ABINIT (default is /opt/etsf for the "prefix" method)
#
prefix="${HOME}/abinit/"

# ---------------------------------------------------------------------------- #
# Global build options                                                         #
# ---------------------------------------------------------------------------- #

# Enable 64-bit compiler flags (default is no)
# Note: you might obtain the same result by setting the *FLAGS_64BITS
# variables manually.
#
#enable_64bit_flags="yes"

# Enable debug mode (default is no)
#
#enable_debug="yes"

# Allow the use of external libraries (default is yes)
# Disable this to force the use of internal versions
#
#enable_extlibs="no"

# Enable advanced configuration features (default is yes)
#
# Notes:
#
#     * known to make the configure script crash in some (rare) cases
#     * required for NQXC library support
#
#enable_smart_config="no"

# Enable compiler tricks (default is yes)
#
#enable_tricks="no"

# ---------------------------------------------------------------------------- #
# Preprocessing                                                                #
# ---------------------------------------------------------------------------- #

# C preprocessor (should not be set in most cases)
#
#CPP="/usr/bin/cpp"

# Set preprocessing options (overrides auto-detection)
# Use with care!
#
#with_cppflags="-DFOO"

# ---------------------------------------------------------------------------- #
# C support                                                                    #
# ---------------------------------------------------------------------------- #

# C compiler
#
#CC="gcc"
#CC="/opt/intel_cc_80/bin/icc"
CC="/home/qzm/bin/pgi/linux86/6.2/bin/pgcc"
# Set optimizations for C source files (overrides auto-detection)
#
#with_cc_optflags="-O3"
# Add link flags for C binaries (default is unset)
#
#with_cc_ldflags=""

# ---------------------------------------------------------------------------- #
# C++ support                                                                  #
# ---------------------------------------------------------------------------- #

# C++ compiler
#
CXX="g++"

# Set optimizations for C++ source files (overrides auto-detection)
#
#with_cxx_optflags="-O3"

# Add link flags for C++ binaries (default is unset)
#
with_cxx_ldflags=""

# ---------------------------------------------------------------------------- #
# Fortran support                                                              #
# ---------------------------------------------------------------------------- #

# Fortran compiler
#
#FC="/home/qzm/intel/fc/9/bin/ifort"
FC="/home/qzm/bin/pgi/linux86/6.2/bin/pgf90"

# Set optimizations for Fortran source files (overrides auto-detection)
#
with_fc_optflags="-O2 -Bstatic"

# Add link flags for Fortran binaries (default is unset)
#
with_fc_ldflags="-L/home/qzm/bin/pgi/linux86/6.2/lib -llapack -lblas"

# Choose whether to read file lists from standard input or "ab.files"
# (default is yes = standard input)
#
#enable_stdin="no"

# Wrap Fortran compiler calls (default is auto-detected)
# Combine this option with enable_debug="yes" to keep preprocessed source
# files (they are removed by default, except if their build fails)
#
#enable_fc_wrapper="yes"

# Set per-directory Fortran optimizations (useful when a Fortran compiler
# crashes during the build)
# Note: this option is not available through the command line
#
#fcflags_opt_11drive="-O0"

# ---------------------------------------------------------------------------- #
# MPI support                                                                  #
# ---------------------------------------------------------------------------- #

# Determine whether to build parallel code (default is unset)
#  * enable_mpi unset : let the "configure" script decide
#  * enable_mpi=yes   : force build of parallel code
#  * enable_mpi=no    : disable MPI support
#
enable_mpi="yes"

# Look for the MPI library in <prefix>/lib (default is unset)
# This is required for MPI support if your Fortran compiler has no native
# MPI support
#
with_mpi_prefix="/home/qzm/bin/mpich2/"

#
# If your MPI installation is not detected, you may set the following
# variables manually (please make sure that "enable_mpi" is set to "yes")
#

# Set MPI C preprocessor (default is unset)
#
#with_mpi_fc="/usr/local/bin/mpicpp"

# Set MPI-specific preprocessing flags (default is unset)
#
#with_mpi_cppflags=""

# Set MPI C compiler (default is unset)
#
with_mpi_cc="/home/qzm/bin/mpich2/bin/mpicc"

# Set MPI-specific C compile flags (default is unset)
#
#with_mpi_cflags=""

# Set MPI-specific C link flags (default is unset)
#
#with_mpi_cc_ldflags="-lmpi"

# Set MPI C++ compiler (default is unset)
#
with_mpi_cxx="/home/qzm/bin/mpich2/bin/mpicxx"

# Set MPI-specific C++ compile flags (default is unset)
#
#with_mpi_cxxflags=""

# Set MPI-specific C++ link flags (default is unset)
#
#with_mpi_cxx_ldflags="-lmpi++"

# Set MPI Fortran 90 compiler (default is unset)
#
with_mpi_fc="/home/qzm/bin/mpich2/bin/mpif90"

# Set MPI-specific Fortran compile flags (default is unset)
#
with_mpi_fcflags="-I /home/qzm/bin/mpich2/include"

# Set MPI-specific Fortran link flags (default is unset)
#
#with_mpi_fc_ldflags="-lmpif90"

# Set MPI Runner for tests (default is unset)
#
#with_mpi_run="/home/qzm/bin/mpich2/bin/mpirun"

# Activate MPI time tracing (default is no)
#
#enable_mpi_trace="yes"

# ---------------------------------------------------------------------------- #
# External libraries                                                           #
# ---------------------------------------------------------------------------- #

# Enable FFTW library support (default is no)
#
#enable_fftw="no"

# Enable threaded FFTW library support (default is no)
# Note: will be ignored if "enable_fftw" is set to "no"
#
#enable_fftw_threads="no"

# Enable BLAS and LAPACK linear algebra libraries support (default is yes)
# Note: disabling them might break the build
#
#enable_linalg="no"

# Link flags for BLAS and LAPACK linear algebra libraries (default is unset)
#
#with_linalg_ldflags=""

# Type of linear algebra libraries to use (default is unset)
# Under development - USE AT YOUR OWN RISKS!
#
# Supported libraries:
#
#    * acml      (not implemented)
#    * asl       (not implemented)
#    * atlas     (untested)
#    * cxml      (not implemented)
#    * essl      (should work)
#    * mkl       (not implemented)
#    * mlib      (not implemented)
#    * sgimath   (not implemented)
#    * sunperf   (not implemented)
#
#with_linalg_type="mkl"
# Enable NetCDF support (default is no)
#
#enable_netcdf="yes"

# Include path for the NetCDF library (default is unset)
#
#with_netcdf_include="-I/usr/local/include/netcdf"

# Link flags for the NetCDF library (default is unset)
#
#with_netcdf_ldflags="/usr/local/lib/netcdf"

# Enable Nanoquanta XC library support (default is no)
# Will be forced to "no" if smart config is disabled (see the
# "build environment" section above)
#
#enable_nqxc="yes"

# Include path for the Nanoquanta XC library (default is unset)
#
#with_nqxc_include="-I${HOME}/include/nqxc"

# Link flags for the Nanoquanta XC library (default is unset)
#
#with_nqxc_ldflags="-L${HOME}/lib/nqxc -lnqxc"

# Enable XMLF90 library support (default is no)
#
#enable_xmlf90="yes"

# Include path for the XMLF90 library (default is unset)
#
#with_xmlf90_include="-I${HOME}/include/xmlf90"

# Link flags for the XMLF90 library (default is unset)
#
#with_xmlf90_ldflags="-L${HOME}/lib/xmlf90 -lxmlf90"

# ---------------------------------------------------------------------------- #
# Maintainer options                                                           #
# ---------------------------------------------------------------------------- #

# Enable dependency tracking (Automake feature)
# Though the exact outcome of this is not known at present, you may
# turn it on if you have a taste for adventure ;-)
#
#enable_dependency_tracking="yes"