The ABINIT Users Mailing List ( CLOSED )

["Anglade Pierre-Matthieu" <anglade@gmail.com>]

could you try the following:
/home/qzm/bin/pgi/linux86/6.2/bin/pgf90  -O3    -o abinis abinit.F90
../../src/11drive/lib11drive.a ../../src/08seqpar/lib08seqpars.a
../../src/07suscep/lib07suscep.a ../../src/06response/lib06response.a
../../src/06geomoptim/lib06geomoptim.a ../../src/05gw/lib05gw.a
../../src/05common/lib05common.a ../../src/04rsprc/lib04rsprc.a
../../src/04occeig/lib04occeig.a
../../src/04iowfdenpot/lib04iowfdenpot.a
../../src/04rsprc/lib04rsprc.a ../../src/04wfs/lib04wfs.a
../../src/03ionetcdf/lib03ionetcdf.a ../../src/03iovars/lib03iovars.a
../../src/03paw/lib03paw.a ../../src/03recipspace/lib03recipspace.a
../../src/03xc/lib03xc.a ../../src/03xml/lib03xml.a
../../src/03nonlocal/lib03nonlocal.a
../../src/02poisson/lib02poisson.a
../../src/02nlstrain/lib02nlstrain.a ../..! /src/02ffts/lib02ffts.a
../../src/02psp/lib02psp.a ../../src/02poisson/lib02poisson.a
../../src/02geometry/lib02geometry.a ../../src/02parser/lib02parser.a
../../src/02spacepar/lib02spacepars.a
../../src/lib01fftnew/liblib01fftnews.a
../../src/01contract/lib01contract.a
../../src/01managempi/lib01managempis.a ../../src/01util/lib01util.a
../../src/01cg/lib01cg.a ../../src/00basis/lib00basis.a
../../src/defs/libdefs.a -L../../lib/numeric -lnumeric
-L../../lib/numericf90 -lnumericf90 -L../../lib/linalg -llinalg
-L/home/qzm/bin/pgi/linux86/6.2/lib -L/usr/lib
-L/usr/lib/gcc-lib/i386-redhat-linux/3.3.3/ -lpgf90 -lpgf90_rpm1
-lpgf902 -lpgf90rtl -lpgftnrtl -lpgsse1 -lpgsse2 -lnspgc -lpgc -lm

On 1/24/07, zmq.lyao <zmq.lyao@gmail.com> wrote:
> I don't know why Abinit use pgcc as linker.
> If I try the same command with pgf90 instead of pgcc as you suggested
> Following erroer shows:
> ---------------------------------
>  /home/qzm/bin/pgi/linux86/6.2/bin/pgf90  -O3    -o abinis
>  ../../src/11drive/lib11drive.a
> ../../src/08seqpar/lib08seqpars.a
> ../../src/07suscep/lib07suscep.a
> ../../src/06response/lib06response.a
> ../../src/06geomoptim/lib06geomoptim.a
> ../../src/05gw/lib05gw.a ../../src/05common/lib05common.a
> ../../src/04rsprc/lib04rsprc.a
> ../../src/04occeig/lib04occeig.a
> ../../src/04iowfdenpot/lib04iowfdenpot.a
> ../../src/04rsprc/lib04rsprc.a ../../src/04wfs/lib04wfs.a
> ../../src/03ionetcdf/lib03ionetcdf.a
> ../../src/03iovars/lib03iovars.a ../../src/03paw/lib03paw.a
> ../../src/03recipspace/lib03recipspace.a
> ../../src/03xc/lib03xc.a ../../src/03xml/lib03xml.a
> ../../src/03nonlocal/lib03nonlocal.a
> ../../src/02poisson/lib02poisson.a
> ../../src/02nlstrain/lib02nlstrain.a ../..!
> /src/02ffts/lib02ffts.a ../../src/02psp/lib02psp.a
> ../../src/02poisson/lib02poisson.a
> ../../src/02geometry/lib02geometry.a
> ../../src/02parser/lib02parser.a
> ../../src/02spacepar/lib02spacepars.a
> ../../src/lib01fftnew/liblib01fftnews.a
> ../../src/01contract/lib01contract.a
> ../../src/01managempi/lib01managempis.a
> ../../src/01util/lib01util.a ../../src/01cg/lib01cg.a
> ../../src/00basis/lib00basis.a ../../src/defs/libdefs.a -L../../lib/numeric
> -lnumeric -L../../lib/numericf90 -lnumericf90 -L../../lib/linalg -llinalg
> -L/home/qzm/bin/pgi/linux86/6.2/lib -L/usr/lib
> -L/usr/lib/gcc-lib/i386-redhat-linux/3.3.3/ -lpgf90
> -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lpgsse1 -lpgsse2 -lnspgc -lpgc
> -lm
>
> /home/qzm/bin/pgi/linux86/6.2/lib/f90main.o(.text+0x77): In
> function `main':
> : undefined reference to `MAIN_'
> ----------------------------------------------------------------------------
>
>
>
>
> On 1/24/07, Anglade Pierre-Matthieu <anglade@gmail.com> wrote:
> > It looks like you are using pgcc as a linker. It may be a good idea to
> > use pgf90 instead because c program do not need generical main
> > function (they MUST include one) unlike  fortran program.
> >
> > Have you tryed the same command with pgf90 instead of pgcc ?
> > /home/qzm/bin/pgi/linux86/6.2/bin/pgf90  -O3    -o abinis
> > ../../src/11drive/lib11drive.a
> ../../src/08seqpar/lib08seqpars.a
> > ../../src/07suscep/lib07suscep.a
> ../../src/06response/lib06response.a
> > ../../src/06geomoptim/lib06geomoptim.a
> ../../src/05gw/lib05gw.a
> > ../../src/05common/lib05common.a
> ../../src/04rsprc/lib04rsprc.a
> > ../../src/04occeig/lib04occeig.a
> > ../../src/04iowfdenpot/lib04iowfdenpot.a
> > ../../src/04rsprc/lib04rsprc.a ../../src/04wfs/lib04wfs.a
> > ../../src/03ionetcdf/lib03ionetcdf.a
> ../../src/03iovars/lib03iovars.a
> > ../../src/03paw/lib03paw.a
> ../../src/03recipspace/lib03recipspace.a
> > ../../src/03xc/lib03xc.a ../../src/03xml/lib03xml.a
> > ../../src/03nonlocal/lib03nonlocal.a
> > ../../src/02poisson/lib02poisson.a
> > ../../src/02nlstrain/lib02nlstrain.a
> ../../src/02ffts/lib02ffts.a
> > ../../src/02psp/lib02psp.a
> ../../src/02poisson/lib02poisson.a
> > ../../src/02geometry/lib02geometry.a
> ../../src/02parser/lib02parser.a
> > ../../src/02spacepar/l! ib02spacepars.a
> > ../../src/lib01fftnew/liblib01fftnews.a
> > ../../src/01contract/lib01contract.a
> > ../../src/01managempi/lib01managempis.a
> ../../src/01util/lib01util.a
> > ../../src/01cg/lib01cg.a ../../src/00basis/lib00basis.a
> > ../../src/defs/libdefs.a -L../../lib/numeric -lnumeric
> > -L../../lib/numericf90 -lnumericf90 -L../../lib/linalg -llinalg
> > -L/home/qzm/bin/pgi/linux86/6.2/lib -L/usr/lib
> > -L/usr/lib/gcc-lib/i386-redhat-linux/3.3.3/ -lpgf90
> -lpgf90_rpm1
> > -lpgf902 -lpgf90rtl -lpgftnrtl -lpgsse1 -lpgsse2 -lnspgc -lpgc -lm
> >
> > On 1/24/07, QY ZML <zmq.lyao@gmail.com > wrote:
> > >
> > >
> > > Thanks for your reply.
> > >
> > > > 1) Which compiler are you using ?
> > >
> > >
> > >        My compiler is PGI6.2
> > >
> > > > 2) can you try the following
> > > >   rm src/main/*.o `find src -name '*.a'`
> > > >   make
> > >
> > >
> > >      I have try it
> > > no .o file in the src/main
> > > "find src -name '*.a'" list many .a files.
> > > however the make command shows the following error:
> > > ...
> > > Making all in main
> > > make[3]: Entering directory `/home/qzm/abinit-src/abinit-
> 5.2.4/src/main'
> > > /home/qzm/bin/pgi/linux86/6.2/bin/pgcc  -O3    -o
> abinis
> > > ../../src/11drive/lib11drive.a
> > > ../../src/08seqpar/lib08seqpars.a
> > > ../../src/07suscep/lib07suscep.a
> > > ../../src/06response/lib06response.a
> > > ../../src/06geomoptim/lib06geomoptim.a
> > > ../../src/05gw/lib05gw.a
> ../../src/05common/lib05common.a
> > > ../../src/04rsprc/lib04rsprc.a
> > > ../../src/04occeig/lib04occeig.a
> > > ../../src/04iowfdenpot/lib04iowfdenpot.a
> > > ../../src/04rsprc/lib04rsprc.a ../../src/04wfs/lib04wfs.a
> > > ../../src/03ionetcdf/lib03ionetcdf.a
> > > ../../src/03iovars/lib03iovars.a
> ../../src/03paw/lib03paw.a
> > > ../../src/03recipspace/lib03recipspace.a
> > > ../../src/03xc/lib03xc.a ../../src/03xml/lib03xml.a
> > > ../../src/03nonlocal/lib03nonlocal.a
> > > ../../src/02poisson/lib02poisson.a
> > > ../../src/02nlstrain/lib02nlstrain.a
> > > ../../src/02ffts/lib02ffts.a ../../src/02psp/lib02psp.a
> > > ../../src/02poisson/lib02poisson.a
> > > ../../src/02geometry/lib02geometry.a
> > > ../../src/02parser/lib02parser.a
> ../../src/02spacepar/l!
> > > ib02spacepars.a ../../src/lib01fftnew/liblib01fftnews.a
> > > ../../src/01contract/lib01contract.a
> > > ../../src/01managempi/lib01managempis.a
> > > ../../src/01util/lib01util.a ../../src/01cg/lib01cg.a
> > > ../../src/00basis/lib00basis.a ../../src/defs/libdefs.a
> -L../../lib/numeric
> > > -lnumeric -L../../lib/numericf90 -lnumericf90 -L../../lib/linalg
> -llinalg
> > > -L/home/qzm/bin/pgi/linux86/6.2/lib -L/usr/lib
> > > -L/usr/lib/gcc-lib/i386-redhat-linux/3.3.3/ -lpgf90
> > > -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lpgsse1 -lpgsse2 -lnspgc
> -lpgc
> > > -lm
> > > /usr/lib/crt1.o(.text+0x18): In function `_start':
> > > : undefined reference to `main'
> > > make[3]: *** [abinis] ′error 2
> > > make[3]: Leaving directory `/home/qzm/abinit-src/abinit-5.2.4/src/main'
> > > make[2]: *** [all-recursive] ′error 1
> > > make[2]: Leaving directory `/home/qzm/abinit-src/abinit- 5.2.4/src'
> > > make[1]: *** [all-recursive] ′error 1
> > > make[1]: Leaving directory `/home/qzm/abinit-src/abinit-5.2.4'
> > > ----------------------------------
> > >
> > > The .ac file is as following:
> > >
> > > #
> > > # Generic config file for ABINIT (documented template)
> > > #
> > > # After editing this file to suit your needs, you may save it as
> > > # "~/.abinit/build/<hostname>.ac" to save these parameters as per-user
> > > # defaults. Just replace "<hostname>" by the name of your machine,
> > > # excluding the domain name.
> > > #
> > > # Example: if your machine is called "myhost.mydomain", you will save
> > > #          this file as "~/.abinit/build/myhost.ac".
> > > #
> > > # You may put this file at the top level of an ABINIT source tree as
> well,
> > > # in which case its definitions will apply to this particular tree only.
> > > #
> > > # Hint: If you do not know the name of your machine, just type
> "hostname".
> > > #
> > >
> > > #
> > > # IMPORTANT NOTES
> > > #
> > > # 1. It may happen that this file is outdated. In such a case, the best
> is
> > > #    to refer to the command-line options of the "configure" script.
> > > #
> > > #    To have a complete list of these options, just type "./configure
> > > --help"
> > > #    from the top source directory of ABINIT.
> > > #
> > > # 2. Setting CPPFLAGS, CFLAGS, CXXFLAGS, or FCFLAGS manually is not
> > > #    recommended and will override any other mechanism involved in
> > > #    their configuration. Use at your own risks.
> > > #
> > > #    A more gentle way to do is to use the "--with-*-optflags"
> command-line
> > > #    options of the "configure" script. See below for details.
> > > #
> > > # 3. Do not forget to remove the leading "#" on a line when you
> customize
> > > #    an option.
> > > #
> > >
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > > # Installation
> > >                    #
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > >
> > > # Select which type of installation will be performed by "make install"
> > > # (default is prefix)
> > > #
> > > # Available methods:
> > > #
> > > #  * prefix: use specified prefix
> > > #  * debian: use Debian/Ubuntu rules
> > > #  * rpm   : use Redhat/Fedora/Mandriva rules
> > > #
> > > # Note: the default is fine for most installations
> > > #
> > > with_install_type="prefix"
> > >
> > > # Where to install ABINIT (default is /opt/etsf for the "prefix" method)
> > > #
> > > prefix="${HOME}/abinit/"
> > >
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > > # Global build options
> > >                    #
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > >
> > > # Enable 64-bit compiler flags (default is no)
> > > # Note: you might obtain the same result by setting the *FLAGS_64BITS
> > > # variables manually.
> > > #
> > > #enable_64bit_flags="yes"
> > >
> > > # Enable debug mode (default is no)
> > > #
> > > #enable_debug="yes"
> > >
> > > # Allow the use of external libraries (default is yes)
> > > # Disable this to force the use of internal versions
> > > #
> > > #enable_extlibs="no"
> > >
> > > # Enable advanced configuration features (default is yes)
> > > #
> > > # Notes:
> > > #
> > > #     * known to make the configure script crash in some (rare) cases
> > > #     * required for NQXC library support
> > > #
> > > #enable_smart_config="no"
> > >
> > > # Enable compiler tricks (default is yes)
> > > #
> > > #enable_tricks="no"
> > >
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > > # Preprocessing
> > >                    #
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > >
> > > # C preprocessor (should not be set in most cases)
> > > #
> > > #CPP="/usr/bin/cpp"
> > >
> > > # Set preprocessing options (overrides auto-detection)
> > > # Use with care!
> > > #
> > > #with_cppflags="-DFOO"
> > >
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > > # C support
> > >                    #
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > >
> > > # C compiler
> > > #
> > > #CC="gcc"
> > > #CC="/opt/intel_cc_80/bin/icc"
> > > CC="/home/qzm/bin/pgi/linux86/6.2/bin/pgcc"
> > > # Set optimizations for C source files (overrides auto-detection)
> > > #
> > >  #with_cc_optflags="-O3"
> > > # Add link flags for C binaries (default is unset)
> > > #
> > > #with_cc_ldflags=""
> > >
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > > # C++ support
> > >                    #
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > >
> > > # C++ compiler
> > > #
> > > CXX="g++"
> > >
> > > # Set optimizations for C++ source files (overrides auto-detection)
> > > #
> > > #with_cxx_optflags="-O3"
> > >
> > > # Add link flags for C++ binaries (default is unset)
> > > #
> > > with_cxx_ldflags=""
> > >
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > > # Fortran support
> > >                    #
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > >
> > > # Fortran compiler
> > > #
> > > #FC="/home/qzm/intel/fc/9/bin/ifort"
> > > FC="/home/qzm/bin/pgi/linux86/6.2/bin/pgf90"
> > >
> > > # Set optimizations for Fortran source files (overrides auto-detection)
> > > #
> > > with_fc_optflags="-O2 -Bstatic"
> > >
> > > # Add link flags for Fortran binaries (default is unset)
> > > #
> > > with_fc_ldflags="-L/home/qzm/bin/pgi/linux86/6.2/lib
> > > -llapack -lblas"
> > >
> > > # Choose whether to read file lists from standard input or "ab.files"
> > > # (default is yes = standard input)
> > > #
> > > #enable_stdin="no"
> > >
> > > # Wrap Fortran compiler calls (default is auto-detected)
> > > # Combine this option with enable_debug="yes" to keep preprocessed
> source
> > > # files (they are removed by default, except if their build fails)
> > >  #
> > > #enable_fc_wrapper="yes"
> > >
> > > # Set per-directory Fortran optimizations (useful when a Fortran
> compiler
> > > # crashes during the build)
> > > # Note: this option is not available through the command line
> > > #
> > > #fcflags_opt_11drive="-O0"
> > >
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > > # MPI support
> > >                    #
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > >
> > > # Determine whether to build parallel code (default is unset)
> > > #  * enable_mpi unset : let the "configure" script decide
> > > #  * enable_mpi=yes   : force build of parallel code
> > > #  * enable_mpi=no    : disable MPI support
> > > #
> > > enable_mpi="yes"
> > >
> > > # Look for the MPI library in <prefix>/lib (default is unset)
> > > # This is required for MPI support if your Fortran compiler has no
> native
> > > # MPI support
> > > #
> > > with_mpi_prefix="/home/qzm/bin/mpich2/"
> > >
> > > #
> > > # If your MPI installation is not detected, you may set the following
> > > # variables manually (please make sure that "enable_mpi" is set to
> "yes")
> > > #
> > >
> > > # Set MPI C preprocessor (default is unset)
> > > #
> > > #with_mpi_fc="/usr/local/bin/mpicpp"
> > >
> > > # Set MPI-specific preprocessing flags (default is unset)
> > > #
> > > #with_mpi_cppflags=""
> > >
> > > # Set MPI C compiler (default is unset)
> > > #
> > > with_mpi_cc="/home/qzm/bin/mpich2/bin/mpicc"
> > >
> > > # Set MPI-specific C compile flags (default is unset)
> > > #
> > > #with_mpi_cflags=""
> > >
> > > # Set MPI-specific C link flags (default is unset)
> > > #
> > > #with_mpi_cc_ldflags="-lmpi"
> > >
> > > # Set MPI C++ compiler (default is unset)
> > > #
> > > with_mpi_cxx="/home/qzm/bin/mpich2/bin/mpicxx"
> > >
> > > # Set MPI-specific C++ compile flags (default is unset)
> > > #
> > > #with_mpi_cxxflags=""
> > >
> > > # Set MPI-specific C++ link flags (default is unset)
> > > #
> > > #with_mpi_cxx_ldflags="-lmpi++"
> > >
> > > # Set MPI Fortran 90 compiler (default is unset)
> > > #
> > > with_mpi_fc="/home/qzm/bin/mpich2/bin/mpif90"
> > >
> > > # Set MPI-specific Fortran compile flags (default is unset)
> > > #
> > > with_mpi_fcflags="-I /home/qzm/bin/mpich2/include"
> > >
> > > # Set MPI-specific Fortran link flags (default is unset)
> > > #
> > > #with_mpi_fc_ldflags="-lmpif90"
> > >
> > > # Set MPI Runner for tests (default is unset)
> > > #
> > > #with_mpi_run="/home/qzm/bin/mpich2/bin/mpirun"
> > >
> > > # Activate MPI time tracing (default is no)
> > > #
> > > #enable_mpi_trace="yes"
> > >
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > > # External libraries
> > >                    #
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > >
> > > # Enable FFTW library support (default is no)
> > > #
> > > #enable_fftw="no"
> > >
> > > # Enable threaded FFTW library support (default is no)
> > > # Note: will be ignored if "enable_fftw" is set to "no"
> > > #
> > > #enable_fftw_threads="no"
> > >
> > > # Enable BLAS and LAPACK linear algebra libraries support (default is
> yes)
> > > # Note: disabling them might break the build
> > > #
> > > #enable_linalg="no"
> > >
> > > # Link flags for BLAS and LAPACK linear algebra libraries (default is
> unset)
> > > #
> > > #with_linalg_ldflags=""
> > >
> > > # Type of linear algebra libraries to use (default is unset)
> > > # Under development - USE AT YOUR OWN RISKS!
> > > #
> > > # Supported libraries:
> > > #
> > > #    * acml      (not implemented)
> > > #    * asl       (not implemented)
> > > #    * atlas     (untested)
> > > #    * cxml      (not implemented)
> > > #    * essl      (should work)
> > > #    * mkl       (not implemented)
> > > #    * mlib      (not implemented)
> > > #    * sgimath   (not implemented)
> > >  #    * sunperf   (not implemented)
> > > #
> > > #with_linalg_type="mkl"
> > > # Enable NetCDF support (default is no)
> > > #
> > > #enable_netcdf="yes"
> > >
> > > # Include path for the NetCDF library (default is unset)
> > > #
> > > #with_netcdf_include="-I/usr/local/include/netcdf"
> > >
> > > # Link flags for the NetCDF library (default is unset)
> > > #
> > > #with_netcdf_ldflags="/usr/local/lib/netcdf"
> > >
> > > # Enable Nanoquanta XC library support (default is no)
> > > # Will be forced to "no" if smart config is disabled (see the
> > > # "build environment" section above)
> > > #
> > > #enable_nqxc="yes"
> > >
> > > # Include path for the Nanoquanta XC library (default is unset)
> > > #
> > > #with_nqxc_include="-I${HOME}/include/nqxc"
> > >
> > > # Link flags for the Nanoquanta XC library (default is unset)
> > > #
> > > #with_nqxc_ldflags="-L${HOME}/lib/nqxc -lnqxc"
> > >
> > > # Enable XMLF90 library support (default is no)
> > > #
> > > #enable_xmlf90="yes"
> > >
> > > # Include path for the XMLF90 library (default is unset)
> > > #
> > > #with_xmlf90_include="-I${HOME}/include/xmlf90"
> > >
> > > # Link flags for the XMLF90 library (default is unset)
> > > #
> > > #with_xmlf90_ldflags="-L${HOME}/lib/xmlf90 -lxmlf90"
> > >
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > > # Maintainer options
> > >                    #
> > > #
> > >
> ----------------------------------------------------------------------------
> > > #
> > >
> > > # Enable dependency tracking (Automake feature)
> > > # Though the exact outcome of this is not known at present, you may
> > > # turn it on if you have a taste for adventure ;-)
> > > #
> > > #enable_dependency_tracking="yes"
> >
> >
> > --
> > Pierre-Matthieu Anglade
> >


--
Pierre-Matthieu Anglade