The ABINIT Users Mailing List ( CLOSED )

[lyang@unb.ca]

Hi,
I am new to the install of applications on Solaris. I am installing 
abinit5.2.4 now. My system type is i386-pc-solaris2.10. When I run configure, 
I tried both GNU assembler and Sun assembler, respectively. When I make it, I 
also tried GNU make and Sun make. But I always get errors when I make it.
Error messages are below. I don't yet have any idea how to solve the problem 
after gooling. Please help. Thanks a lot.

make  all-recursive
Making all in bin
Making all in lib
Making all in light
Making all in macroav
Making all in numeric
Making all in numericf90
Making all in src
Making all in defs
/net/samqfs/main/apps/src/abinit-5.2.4/util/build/wrap-fc -DHAVE_CONFIG_H -I. 
-I. -I../.. -I../defs -I./../defs    -g -O0  -c -o defs_infos.o defs_infos.F90
ABINIT WRAPPER BEGIN
/lib/cpp -P -std=c89    -DHAVE_CONFIG_H  -I. -I. -I../.. -I../defs 
-I./../defs -I. -I. -I../.. -I../defs -I./../defs defs_infos.F90 > 
defs_infos_cpp.f90
unknown flag -std=c89
/usr/local/mpich-mx.64/bin/mpif90   -M. -M. -M../.. -M../defs -M./../defs -I. 
-I. -I../.. -I../defs -I./../defs -g -O0 -c -o defs_infos.o defs_infos_cpp.f90
ABINIT WRAPPER END
/net/samqfs/main/apps/src/abinit-5.2.4/util/build/wrap-fc -DHAVE_CONFIG_H -I. 
-I. -I../.. -I../defs -I./../defs    -g -O0  -c -o interfaces_01managempi.o 
interfaces_01managempi.F90
ABINIT WRAPPER BEGIN
/lib/cpp -P -std=c89    -DHAVE_CONFIG_H  -I. -I. -I../.. -I../defs 
-I./../defs -I. -I. -I../.. -I../defs -I./../defs interfaces_01managempi.F90 
> interfaces_01managempi_cpp.f90
unknown flag -std=c89
/usr/local/mpich-mx.64/bin/mpif90   -M. -M. -M../.. -M../defs -M./../defs -I. 
-I. -I../.. -I../defs -I./../defs -g -O0 -c -o interfaces_01managempi.o 
interfaces_01managempi_cpp.f90
ABINIT WRAPPER END
rm -f libdefs.a
/usr/ccs/bin/ar cru libdefs.a defs_aimfields.o defs_aimprom.o  defs_basis.o 
defs_berry.o  defs_datatypes.o defs_dyson.o  defs_elphon.o defs_interfaces.o  
defs_netcdf.o defs_parameters.o  defs_suscep.o defs_time.o defs_xc.o  
defs_xderive.o defs_xfuncmpi.o  dummy_interfaces_defs.o ftfvw1.o  
frskerker2.o frskerker1.o ftfvw2.o  interfaces_numeric.o 
interfaces_numericf90.o  interfaces_light.o interfaces_macroav.o  
interfaces_netcdf.o interfaces_nqxc.o  interfaces_xmlf90.o 
interfaces_00basis.o  interfaces_01cg.o interfaces_01contract.o  
interfaces_lib01fftnew.o  interfaces_01managempi.o interfaces_01util.o  
interfaces_02ffts.o interfaces_02geometry.o  interfaces_02nlstrain.o 
interfaces_02parser.o  interfaces_02poisson.o interfaces_02psp.o  
interfaces_02spacepar.o  interfaces_03ionetcdf.o interfaces_03iovars.o  
interfaces_03nonlocal.o interfaces_03paw.o  interfaces_03recipspace.o 
interfaces_03xc.o  interfaces_03xml.o interfaces_04bader.o  
interfaces_04iowfdenpot.o  interfaces_04occeig.o interfaces_04rsprc.o  
interfaces_04wfs.o interfaces_05common.o  interfaces_05gw.o 
interfaces_06geomoptim.o  interfaces_06response.o interfaces_07ddb.o  
interfaces_07lwf.o interfaces_07suscep.o  interfaces_08seqpar.o 
interfaces_09cut3d.o  interfaces_11drive.o m_pseudo_types.o  m_pseudo.o  
defs_infos.o 
ranlib libdefs.a
Making all in 01cg
Making all in 00basis
Making all in 01managempi
Making all in 01util
Making all in 01contract
Making all in lib01fftnew
Making all in 02spacepar
Making all in 02parser
Making all in 02geometry
Making all in 02psp
Making all in 02ffts
Making all in 02nlstrain
Making all in 02poisson
Making all in 03xml
Making all in 03xc
Making all in 03recipspace
Making all in 03paw
Making all in 03iovars
Making all in 03nonlocal
Making all in 03ionetcdf
Making all in 04wfs
Making all in 04iowfdenpot
Making all in 04bader
Making all in 04occeig
Making all in 04rsprc
Making all in 05common
Making all in 05gw
Making all in 06response
Making all in 06geomoptim
Making all in 07suscep
Making all in 07lwf
Making all in 07ddb
Making all in 08seqpar
Making all in 09cut3d
Making all in 11drive
Making all in main
/net/samqfs/main/apps/src/abinit-5.2.4/util/build/wrap-fc -g -O0    -o  
abinis  abinit.o ../../src/11drive/lib11drive.a  
../../src/08seqpar/lib08seqpars.a  ../../src/07suscep/lib07suscep.a  
../../src/06response/lib06response.a  ../../src/06geomoptim/lib06geomoptim.a  
../../src/05gw/lib05gw.a  ../../src/05common/lib05common.a  
../../src/04rsprc/lib04rsprc.a  ../../src/04occeig/lib04occeig.a  
../../src/04iowfdenpot/lib04iowfdenpot.a  ../../src/04rsprc/lib04rsprc.a  
../../src/04wfs/lib04wfs.a  ../../src/03ionetcdf/lib03ionetcdf.a  
../../src/03iovars/lib03iovars.a  ../../src/03paw/lib03paw.a  
../../src/03recipspace/lib03recipspace.a  ../../src/03xc/lib03xc.a  
../../src/03xml/lib03xml.a  ../../src/03nonlocal/lib03nonlocal.a  
../../src/02poisson/lib02poisson.a  ../../src/02nlstrain/lib02nlstrain.a  
../../src/02ffts/lib02ffts.a  ../../src/02psp/lib02psp.a  
../../src/02poisson/lib02poisson.a  ../../src/02geometry/lib02geometry.a  
../../src/02parser/lib02parser.a  ../../src/02spacepar/lib02spacepars.a  
../../src/lib01fftnew/liblib01fftnews.a  ../../src/01contract/lib01contract.a 
 ../../src/01managempi/lib01managempis.a  ../../src/01util/lib01util.a  
../../src/01cg/lib01cg.a  ../../src/00basis/lib00basis.a  
../../src/defs/libdefs.a  -L../../lib/numeric -lnumeric  
-L../../lib/numericf90 -lnumericf90          -R/opt/SUNWspro/lib 
-L/opt/SUNWspro/lib -L/opt/SUNWspro/prod/lib -L/usr/ccs/lib -L/lib -L/usr/lib 
-lfui -lfai -lfsu -lsunmath -lmtsk -lm 
ABINIT WRAPPER BEGIN
/usr/local/mpich-mx.64/bin/mpif90   -g -O0 -o abinis abinit.o 
../../src/11drive/lib11drive.a ../../src/08seqpar/lib08seqpars.a 
../../src/07suscep/lib07suscep.a ../../src/06response/lib06response.a 
../../src/06geomoptim/lib06geomoptim.a ../../src/05gw/lib05gw.a 
../../src/05common/lib05common.a ../../src/04rsprc/lib04rsprc.a 
../../src/04occeig/lib04occeig.a ../../src/04iowfdenpot/lib04iowfdenpot.a 
../../src/04rsprc/lib04rsprc.a ../../src/04wfs/lib04wfs.a 
../../src/03ionetcdf/lib03ionetcdf.a ../../src/03iovars/lib03iovars.a 
../../src/03paw/lib03paw.a ../../src/03recipspace/lib03recipspace.a 
../../src/03xc/lib03xc.a ../../src/03xml/lib03xml.a 
../../src/03nonlocal/lib03nonlocal.a ../../src/02poisson/lib02poisson.a 
../../src/02nlstrain/lib02nlstrain.a ../../src/02ffts/lib02ffts.a 
../../src/02psp/lib02psp.a ../../src/02poisson/lib02poisson.a 
../../src/02geometry/lib02geometry.a ../../src/02parser/lib02parser.a 
../../src/02spacepar/lib02spacepars.a ../../src/lib01fftnew/liblib01fftnews.a 
../../src/01contract/lib01contract.a ../../src/01managempi/lib01managempis.a 
../../src/01util/lib01util.a ../../src/01cg/lib01cg.a 
../../src/00basis/lib00basis.a ../../src/defs/libdefs.a -L../../lib/numeric 
-lnumeric -L../../lib/numericf90 -lnumericf90 -R/opt/SUNWspro/lib 
-L/opt/SUNWspro/lib -L/opt/SUNWspro/prod/lib -L/usr/ccs/lib -L/lib -L/usr/lib 
-lfui -lfai -lfsu -lsunmath -lmtsk -lm
ld: warning: file /opt/SUNWspro/prod/lib/libfui.a(etime_.o): wrong ELF class: 
ELFCLASS32
ld: warning: file /opt/SUNWspro/lib/libfai.a(cgemm.o): wrong ELF class: 
ELFCLASS32
ld: warning: file /opt/SUNWspro/prod/lib/libfsu.a(adjust.o): wrong ELF class: 
ELFCLASS32
ld: warning: file /opt/SUNWspro/prod/lib/libsunmath.a(atanf.o): wrong ELF 
class: ELFCLASS32
ld: warning: file /opt/SUNWspro/prod/lib/libfui.a(random.o): wrong ELF class: 
ELFCLASS32
ld: warning: file /lib/libdl.so.1: wrong ELF class: ELFCLASS32
Undefined                       first referenced
 symbol                             in file
__f90_llen_trim_                    abinit.o
__Fz_div_f                          
../../src/11drive/lib11drive.a(screening.o)
ddot_                               
../../src/08seqpar/lib08seqpars.a(cgwf_htor.o)
exit_                               
../../src/00basis/lib00basis.a(leave_myproc.o)
zdscal_                             
../../src/08seqpar/lib08seqpars.a(cgwf_htor.o)
__f90_sfw_c8                        ../../src/05gw/lib05gw.a(rdscr.o)
__f90_sfw_i4                        abinit.o
__f90_sfw_ch                        abinit.o
__f90_sfw_r4                        
../../src/08seqpar/lib08seqpars.a(csigme.o)
__f90_sfw_r8                        abinit.o
__f90_sfr_c4                        ../../src/05gw/lib05gw.a(rdlda.o)
__f90_sfr_i4                        
../../src/06response/lib06response.a(blok8.o)
__f90_sfr_ch                        ../../src/08seqpar/lib08seqpars.a(iofn1.o)
__f90_sfr_r4                        ../../src/05gw/lib05gw.a(rdlda.o)
__f90_sfr_r8                        
../../src/06response/lib06response.a(blok8.o)
__f90_slw_c4                        ../../src/05gw/lib05gw.a(wrqps.o)
__f90_slw_i4                        
../../src/11drive/lib11drive.a(nonlinear.o)
__f90_slw_ch                        abinit.o
__f90_slw_r4                        
../../src/11drive/lib11drive.a(screening.o)
__f90_slw_r8                        
../../src/11drive/lib11drive.a(screening.o)
__f90_slr_c4                        ../../src/05gw/lib05gw.a(rdqps.o)
__f90_slr_i4                        
../../src/11drive/lib11drive.a(screening.o)
__f90_slr_ch                        ../../src/08seqpar/lib08seqpars.a(iofn2.o)
__f90_slr_r8                        ../../src/11drive/lib11drive.a(brdmin.o)
__f90_rewind                        abinit.o
zgetrf_                             
../../src/07suscep/lib07suscep.a(acfd_intexact.o)
zhegst_                             ../../src/04wfs/lib04wfs.a(bestwfs.o)
zhpevx_                             
../../src/08seqpar/lib08seqpars.a(outkss.o)
__f90_suw_c8                        
../../src/08seqpar/lib08seqpars.a(outkss.o)
__f90_suw_i4                        
../../src/08seqpar/lib08seqpars.a(outkss.o)
__f90_suw_i8                        
../../src/01managempi/lib01managempis.a(hdr_io.o)
__f90_suw_r8                        
../../src/11drive/lib11drive.a(optics_paw.o)
__f90_sur_16                        ../../src/05gw/lib05gw.a(rdscr.o)
izamax_                             ../../lib/numeric/libnumeric.a(zgefa.o)
zpotrf_                             
../../src/08seqpar/lib08seqpars.a(lobpcgccwf.o)
__f90_backspace                     ../../src/08seqpar/lib08seqpars.a(iofn2.o)
__f_index_8a                        
../../src/03iovars/lib03iovars.a(invars1.o)
__f90_ifw_c8                        
../../src/11drive/lib11drive.a(screening.o)
__f90_ifw_i4                        abinit.o
__f90_ifw_ch                        abinit.o
__f90_ifw_r4                        ../../src/05common/lib05common.a(dsksta.o)
__f90_ifw_r8                        ../../src/11drive/lib11drive.a(gstate.o)
__f90_ifr_i4                        
../../src/04iowfdenpot/lib04iowfdenpot.a(hdr_init.o)
__f90_ilw_i4                        
../../src/08seqpar/lib08seqpars.a(vtorho.o)
__f90_ilw_ch                        ../../src/11drive/lib11drive.a(brdmin.o)
__f90_ilw_r8                        abinit.o
__f90_ilr_l4                        ../../src/02parser/lib02parser.a(inread.o)
__f90_ilr_i4                        ../../src/08seqpar/lib08seqpars.a(iofn2.o)
__f90_ilr_r8                        ../../src/03xml/lib03xml.a(append_cml2.o)
__f95_cgemm_                        ../../src/05gw/lib05gw.a(setup_hamilt.o)
__f90_duw_c4                        
../../src/11drive/lib11drive.a(screening.o)
__f90_duw_i4                        ../../src/08seqpar/lib08seqpars.a(tddft.o)
__f90_duw_i8                        ../../src/08seqpar/lib08seqpars.a(tddft.o)
__f90_duw_r8                        ../../src/08seqpar/lib08seqpars.a(tddft.o)
__f95_dgemm_                        
../../src/06response/lib06response.a(wrtloctens.o)
__f90_open_form                     ../../src/01util/lib01util.a(clsopn.o)
__f95_error_message_and_abort       abinit.o
__anint                             ../../src/11drive/lib11drive.a(moldyn.o)
__c_abs                             ../../src/11drive/lib11drive.a(sigma.o)
__z_abs                             
../../src/08seqpar/lib08seqpars.a(outkss.o)
__f90_parse_format                  ../../src/11drive/lib11drive.a(testfi.o)
__f90_suw_n                         
../../src/11drive/lib11drive.a(optics_paw.o)
__f90_sur_n                         
../../src/08seqpar/lib08seqpars.a(newkpt.o)
__f90_sur_4                         
../../src/08seqpar/lib08seqpars.a(newkpt.o)
__f90_sur_8                         
../../src/08seqpar/lib08seqpars.a(outkss.o)
__f90_close                         abinit.o
__f90_dur_4                         ../../src/08seqpar/lib08seqpars.a(tddft.o)
__f90_dur_8                         ../../src/08seqpar/lib08seqpars.a(tddft.o)
__aint                              
../../src/06response/lib06response.a(eltxccore.o)
_F90_ADJUSTL_8                      ../../src/08seqpar/lib08seqpars.a(iofn2.o)
__pow_ii                            ../../src/05common/lib05common.a(uderiv.o)
__pow_di                            ../../src/05common/lib05common.a(prcref.o)
__pow_dl                            ../../src/03paw/lib03paw.a(nhatgrid.o)
__pow_ll                            ../../src/11drive/lib11drive.a(gstate.o)
cdotc_                              
../../src/08seqpar/lib08seqpars.a(csigme.o)
cgemm_                              ../../src/05gw/lib05gw.a(iosig.o)
cgemv_                              
../../src/08seqpar/lib08seqpars.a(csigme.o)
cgerc_                              ../../src/05gw/lib05gw.a(assemblychi0.o)
dcopy_                              
../../src/02poisson/lib02poisson.a(scaling_function.o)
dgemm_                              
../../src/08seqpar/lib08seqpars.a(lobpcgwf.o)
dgemv_                              
../../src/06geomoptim/lib06geomoptim.a(deloc2xcart.o)
__c_sqrt_f                          ../../src/05gw/lib05gw.a(cppm4par.o)
dposv_                              
../../src/05common/lib05common.a(constrf.o)
dsyev_                              
../../src/08seqpar/lib08seqpars.a(lobpcgwf.o)
dsygv_                              
../../src/08seqpar/lib08seqpars.a(lobpcgwf.o)
dtrsm_                              
../../src/08seqpar/lib08seqpars.a(lobpcgwf.o)
etime_                              ../../src/00basis/lib00basis.a(timein.o)
__pow_zi_f                          ../../src/03paw/lib03paw.a(initylmr.o)
zaxpy_                              
../../src/08seqpar/lib08seqpars.a(cgwf_htor.o)
zcopy_                              
../../src/08seqpar/lib08seqpars.a(cgwf_htor.o)
zdotc_                              
../../src/08seqpar/lib08seqpars.a(cgwf_htor.o)
zgemm_                              
../../src/08seqpar/lib08seqpars.a(lobpcgccwf.o)
zgemv_                              
../../src/07suscep/lib07suscep.a(dyson_sc.o)
zgerc_                              
../../src/07suscep/lib07suscep.a(susk_dyn.o)
zgesv_                              
../../src/07suscep/lib07suscep.a(dyson_ls.o)
zheev_                              
../../src/08seqpar/lib08seqpars.a(lobpcgccwf.o)
zhegv_                              
../../src/08seqpar/lib08seqpars.a(lobpcgccwf.o)
zhemm_                              
../../src/07suscep/lib07suscep.a(dyson_de.o)
zhpev_                              
../../src/08seqpar/lib08seqpars.a(outkss.o)
zhpgv_                              
../../src/08seqpar/lib08seqpars.a(subdiago.o)
zscal_                              ../../lib/numeric/libnumeric.a(zgedi.o)
zswap_                              ../../lib/numeric/libnumeric.a(zgedi.o)
ztrsm_                              
../../src/08seqpar/lib08seqpars.a(lobpcgccwf.o)
__Fc_div_f                          
../../src/11drive/lib11drive.a(screening.o)
cgetri_                             ../../src/01util/lib01util.a(matcginv.o)
cgetrf_                             ../../src/01util/lib01util.a(matcginv.o)
dgetri_                             
../../src/06response/lib06response.a(getshell.o)
dgetrf_                             
../../src/06response/lib06response.a(getshell.o)
_DATE_AND_TIME                      abinit.o
dpotrf_                             
../../src/08seqpar/lib08seqpars.a(lobpcgwf.o)
__f90_sifr                          
../../src/04iowfdenpot/lib04iowfdenpot.a(hdr_init.o)
__f90_sifw                          abinit.o
__f90_silr                          ../../src/08seqpar/lib08seqpars.a(iofn2.o)
__f90_silw                          abinit.o
__f90_sdur                          ../../src/08seqpar/lib08seqpars.a(tddft.o)
__f90_sduw                          
../../src/11drive/lib11drive.a(screening.o)
__f90_ssfr                          ../../src/08seqpar/lib08seqpars.a(iofn1.o)
__f90_ssfw                          abinit.o
__f90_sslr                          
../../src/11drive/lib11drive.a(screening.o)
__f90_sslw                          abinit.o
__f90_ssur                          
../../src/08seqpar/lib08seqpars.a(newkpt.o)
__f90_ssuw                          
../../src/11drive/lib11drive.a(optics_paw.o)
__f90_stop                          ../../src/11drive/lib11drive.a(vtorhotf.o)
__f90_esfr                          ../../src/08seqpar/lib08seqpars.a(iofn1.o)
__f90_esfw                          abinit.o
__f90_eslr                          
../../src/11drive/lib11drive.a(screening.o)
__f90_eslw                          abinit.o
__f90_esur                          
../../src/08seqpar/lib08seqpars.a(newkpt.o)
__f90_esuw                          
../../src/11drive/lib11drive.a(optics_paw.o)
__f90_inqu                          ../../src/03iovars/lib03iovars.a(outqmc.o)
__f90_inqf                          
../../src/11drive/lib11drive.a(screening.o)
__f90_init                          abinit.o
__f90_eifr                          
../../src/04iowfdenpot/lib04iowfdenpot.a(hdr_init.o)
__f90_eifw                          abinit.o
__f90_eilr                          ../../src/08seqpar/lib08seqpars.a(iofn2.o)
__f90_eilw                          abinit.o
__f90_edur                          ../../src/08seqpar/lib08seqpars.a(tddft.o)
__f90_eduw                          
../../src/11drive/lib11drive.a(screening.o)
__f90_open                          abinit.o
f90_init                            abinit.o
__f90_allocate2                     abinit.o
__f95_sign                          
../../src/08seqpar/lib08seqpars.a(outkss.o)
__f95_restore_contig                ../../src/11drive/lib11drive.a(driver.o)
__f95_make_contig                   ../../src/11drive/lib11drive.a(driver.o)
__f90_deallocate                    abinit.o
__f90_stop_char                     
../../src/11drive/lib11drive.a(screening.o)
ld: fatal: Symbol referencing errors. No output written to abinis
ABINIT WRAPPER END
*** Error code 1
make: Fatal error: Command failed for target `abinis'
Current working directory /net/samqfs/main/apps/src/abinit-5.2.4/src/main
*** Error code 1
The following command caused the error:
failcom='exit 1'; \
for f in x $MAKEFLAGS; do \
  case $f in \
    *=* | --[!k]*);; \
    *k*) failcom='fail=yes';; \
  esac; \
done; \
dot_seen=no; \
target=`echo all-recursive | sed s/-recursive//`; \
list='defs  01cg  00basis  01managempi  01util  01contract  lib01fftnew  
02spacepar  02parser  02geometry  02psp  02ffts  02nlstrain  02poisson  03xml 
 03xc  03recipspace  03paw  03iovars  03nonlocal  03ionetcdf  04wfs  
04iowfdenpot  04bader  04occeig  04rsprc  05common  05gw  06response  
06geomoptim  07suscep  07lwf  07ddb  08seqpar  09cut3d  11drive  main'; for 
subdir in $list; do \
  echo "Making $target in $subdir"; \
  if test "$subdir" = "."; then \
    dot_seen=yes; \
    local_target="$target-am"; \
  else \
    local_target="$target"; \
  fi; \
  (cd $subdir && make  $local_target) \
  || eval $failcom; \
done; \
if test "$dot_seen" = "no"; then \
  make  "$target-am" || exit 1; \
fi; test -z "$fail"
make: Fatal error: Command failed for target `all-recursive'
Current working directory /net/samqfs/main/apps/src/abinit-5.2.4/src
*** Error code 1
The following command caused the error:
failcom='exit 1'; \
for f in x $MAKEFLAGS; do \
  case $f in \
    *=* | --[!k]*);; \
    *k*) failcom='fail=yes';; \
  esac; \
done; \
dot_seen=no; \
target=`echo all-recursive | sed s/-recursive//`; \
list='bin lib src vms doc tests'; for subdir in $list; do \
  echo "Making $target in $subdir"; \
  if test "$subdir" = "."; then \
    dot_seen=yes; \
    local_target="$target-am"; \
  else \
    local_target="$target"; \
  fi; \
  (cd $subdir && make  $local_target) \
  || eval $failcom; \
done; \
if test "$dot_seen" = "no"; then \
  make  "$target-am" || exit 1; \
fi; test -z "$fail"
make: Fatal error: Command failed for target `all-recursive'
Current working directory /net/samqfs/main/apps/src/abinit-5.2.4
*** Error code 1
make: Fatal error: Command failed for target `all'