The ABINIT Users Mailing List ( CLOSED )

["Anglade Pierre-Matthieu" <anglade@gmail.com>]

Hi,
The first problem is very natural because you do not use gcc. The test
is just "choking you" because of that and this is not a problem. The
second problem is again a 64/32 bit one. It looks like by default your
f90 is producing 32 bits binaries.
You can test that by:
- Making a small fortran program that do nothing. eg :
program nothing
integer::a
a=1
end program nothing
- compile it f90 nothing.F90
- run "file a.out"
'File' will probably tell you that your program is a 32 bits one.
Then you must find a flag (or another way) to force your compiler in
making a 64 bit binary (try man or f90 --help or tell us which
compiler you are using).

regards

PMA

On 3/8/07, Yang, Lu <lyang@unb.ca> wrote:
> Hi Yann and PMA,
> I tried to install Abinit 5.3.3 today. I can build and compile 32bit. But for 
> 64 bit, I
> still have problems.
> Here's what I did.
>
> 1. setenv LD_LIBRARY_PATH
> /opt/SUNWspro/prod/lib/amd64:/usr/local/mpich-mx.64/lib:/opt/mx/lib64:/opt/SUNWspro/lib/amd64
> 2. in tmp, type ../configure
> 3. gmake
>
> In config.log, I found:
>
> configure:4979: cc -c   conftest.c >&5
> "conftest.c", line 22: undefined symbol: choke
> "conftest.c", line 22: syntax error before or at: me
> cc: acomp failed for conftest.c
> configure:4985: $? = 2
> configure: failed program was:
> | /* confdefs.h.  */
> |
> | #define PACKAGE_NAME "ABINIT"
> | #define PACKAGE_TARNAME "abinit"
> | #define PACKAGE_VERSION "5.3.3"
> | #define PACKAGE_STRING "ABINIT 5.3.3"
> | #define PACKAGE_BUGREPORT "pouillon@pcpm.ucl.ac.be"
> | #define PACKAGE "abinit"
> | #define VERSION "5.3.3"
> | #define ABINIT_VERSION "5.3.3"
> | #define ABINIT_VERSION_MAJOR "5"
> | #define ABINIT_VERSION_MINOR "3"
> | #define ABINIT_VERSION_MICRO "3"
> | #define ABINIT_VERSION_BUILD "20070307"
> | #define ABINIT_VERSION_BASE "5.3"
> | /* end confdefs.h.  */
> |
> | int
> | main ()
> | {
> | #ifndef __GNUC__
> |        choke me
> | #endif
> |
> |   ;
> |   return 0;
> | }
>
>
> There are similar output in config.log for CC and f90. But when I try cc, CC 
> and f90 in
> command line using the same code, I was successful.
>
> In config.log, I also found:
>
> configure:8943: f90 -o conftest    conftest.F90  >&5
> ld: warning: file /opt/SUNWspro/prod/lib/amd64/libfsu.a(__f90_flush_all.o): 
> wrong ELF
> class: ELFCLASS64
> ld: warning: file /opt/SUNWspro/prod/lib/amd64/libsunmath.a(ieee_vals.o): 
> wrong ELF
> class: ELFCLASS64
> Undefined                       first referenced
>  symbol                             in file
> __f90_init                          conftest.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so
> .1)
> f90_init                            conftest.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so
> .1)
> ld: fatal: Symbol referencing errors. No output written to conftest
> configure:8949: $? = 1
> configure: failed program was:
> |       program main
> |
> |       call exit(1)
> |
> |       end
>
> After I type gmake, I got the following errors:
>
> ld: warning: file /opt/SUNWspro/prod/lib/amd64/libfsu.a(adjust.o): wrong ELF 
> class:
> ELFCLASS64
> ld: warning: file /opt/SUNWspro/prod/lib/amd64/libsunmath.a(ieee_vals.o): 
> wrong ELF
> class: ELFCLASS64
> Undefined                       first referenced
>  symbol                             in file
> __f90_sfw_c8                        ../../src/15gw/lib15gw.a(rdscr.o)  
> (symbol belongs
> to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sfw_i4                        abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sfw_ch                        abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sfw_r4                        ../../src/15gw/lib15gw.a(csigme.o)  
> (symbol belongs
> to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sfw_r8                        abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sfr_c4                        ../../src/15gw/lib15gw.a(rdlda.o)  
> (symbol belongs
> to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sfr_i4                        
> ../../src/16response/lib16response.a(blok8.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sfr_ch                        abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sfr_r4                        ../../src/15gw/lib15gw.a(rdlda.o)  
> (symbol belongs
> to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sfr_r8                        
> ../../src/16response/lib16response.a(blok8.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_slw_c4                        ../../src/15gw/lib15gw.a(wrqps.o)  
> (symbol belongs
> to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_slw_i4                        
> ../../src/21drive/lib21drive.a(nonlinear.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_slw_ch                        abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_slw_r4                        
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_slw_r8                        
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_slr_c4                        ../../src/15gw/lib15gw.a(rdqps.o)  
> (symbol belongs
> to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_slr_i4                        
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_slr_ch                        
> ../../src/18seqpar/lib18seqpars.a(iofn2.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_slr_r8                        
> ../../src/18seqpar/lib18seqpars.a(iofn2.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_rewind                        abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_suw_c8                        ../../src/15gw/lib15gw.a(wrscr.o)  
> (symbol belongs
> to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_suw_i4                        
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_suw_r8                        
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sur_16                        ../../src/15gw/lib15gw.a(rdscr.o)  
> (symbol belongs
> to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_stop_int                      
> ../../src/00basis/lib00basis.a(leave_myproc.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_backspace                     
> ../../src/18seqpar/lib18seqpars.a(iofn2.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ifw_c8                        
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ifw_i4                        abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ifw_ch                        abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ifw_r4                        ../../src/15gw/lib15gw.a(iosig.o)  
> (symbol belongs
> to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ifw_r8                        ../../src/21drive/lib21drive.a(gstate.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ifr_i4                        
> ../../src/14iowfdenpot/lib14iowfdenpot.a(hdr_init.o)
>  (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ilw_i4                        
> ../../src/18seqpar/lib18seqpars.a(vtorho.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ilw_ch                        
> ../../src/18seqpar/lib18seqpars.a(vtorho.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ilw_r8                        abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ilr_l4                        
> ../../src/12parser/lib12parser.a(inread.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ilr_i4                        
> ../../src/18seqpar/lib18seqpars.a(iofn2.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ilr_r8                        
> ../../src/18seqpar/lib18seqpars.a(iofn2.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __Fc_div                            
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __Fz_div                            
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_duw_c4                        
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_duw_i4                        
> ../../src/18seqpar/lib18seqpars.a(tddft.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_duw_r8                        
> ../../src/18seqpar/lib18seqpars.a(tddft.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_open_form                     ../../src/11util/lib11util.a(clsopn.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f95_error_message_and_abort       abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __anint                             
> ../../src/13recipspace/lib13recipspace.a(symkchk.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libsunmath.so.1)
> __c_abs                             ../../src/21drive/lib21drive.a(sigma.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __z_abs                             
> ../../src/18seqpar/lib18seqpars.a(outkss.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __c_sqrt                            ../../src/15gw/lib15gw.a(cppm4par.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __i_dnnt                            ../../src/21drive/lib21drive.a(moldyn.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_parse_format                  ../../src/21drive/lib21drive.a(testfi.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_suw_n                         
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sur_n                         
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sur_4                         
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sur_8                         
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_close                         abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_dur_4                         
> ../../src/18seqpar/lib18seqpars.a(tddft.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_dur_8                         
> ../../src/18seqpar/lib18seqpars.a(tddft.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __aint                              
> ../../src/16response/lib16response.a(eltxccore.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libsunmath.so.1)
> _F90_ADJUSTL_8                      
> ../../src/18seqpar/lib18seqpars.a(iofn2.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __pow_zi                            ../../src/13paw/lib13paw.a(initylmr.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __pow_ii                            ../../src/21drive/lib21drive.a(gstate.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __pow_di                            
> ../../src/15common/lib15common.a(prcref.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> _DATE_AND_TIME                      abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_len_trim_                     abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f_index                           
> ../../src/13iovars/lib13iovars.a(invars1.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sifr                          
> ../../src/14iowfdenpot/lib14iowfdenpot.a(hdr_init.o)
>  (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sifw                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_silr                          
> ../../src/18seqpar/lib18seqpars.a(iofn2.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_silw                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sdur                          
> ../../src/18seqpar/lib18seqpars.a(tddft.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sduw                          
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ssfr                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ssfw                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sslr                          
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_sslw                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ssur                          
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_ssuw                          
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_stop                          
> ../../src/21drive/lib21drive.a(vtorhotf.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_esfr                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_esfw                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_eslr                          
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_eslw                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_esur                          
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_esuw                          
> ../../src/18seqpar/lib18seqpars.a(ctocprj.o)
> (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_inqu                          
> ../../src/13iovars/lib13iovars.a(outqmc.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_inqf                          
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_init                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_eifr                          
> ../../src/14iowfdenpot/lib14iowfdenpot.a(hdr_init.o)
>  (symbol belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_eifw                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_eilr                          
> ../../src/18seqpar/lib18seqpars.a(iofn2.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_eilw                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_edur                          
> ../../src/18seqpar/lib18seqpars.a(tddft.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_eduw                          
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_open                          abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> f90_init                            abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_allocate2                     abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f95_sign                          
> ../../src/18seqpar/lib18seqpars.a(outkss.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f95_restore_contig                ../../src/21drive/lib21drive.a(driver.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f95_make_contig                   ../../src/21drive/lib21drive.a(driver.o)  
> (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> __f90_deallocate                    abinit.o  (symbol belongs to implicit 
> dependency
> /opt/SUNWspro/lib/libfsu.so.1)
> __f90_stop_char                     
> ../../src/21drive/lib21drive.a(screening.o)  (symbol
> belongs to implicit dependency /opt/SUNWspro/lib/libfsu.so.1)
> ld: fatal: Symbol referencing errors. No output written to abinis
> ABINIT WRAPPER END
> gmake[3]: *** [abinis] Error 1
> gmake[3]: Leaving directory 
> `/net/nfs1-data/main/apps/src/abinit-5.3.3/tmp/src/main'
> gmake[2]: *** [all-recursive] Error 1
> gmake[2]: Leaving directory 
> `/net/nfs1-data/main/apps/src/abinit-5.3.3/tmp/src'
> gmake[1]: *** [all-recursive] Error 1
> gmake[1]: Leaving directory `/net/nfs1-data/main/apps/src/abinit-5.3.3/tmp'
> gmake: *** [all] Error 2
>
> It seems I still have library problems. But I have no idea how to solve it. 
> Thanks a lot
> for your time.
>
>
>
>
> Quoting Yann Pouillon <yann_pouillon@ehu.es>:
>
> > Le jeudi 01 mars 2007 à 08:39 +0100, Anglade Pierre-Matthieu a écrit :
> >
> > > It lloks like the --enable-64-bit flag do not wotk for you for some
> > > reasons. You have to find out the actual flags your compiler needs to
> > > be forced to 64 bits (or 32 bits) and get sure that they are given to
> > > it on each compilation line. An usually reliable way to do that is for
> > > instance to issue:
> > > ../configure FC="gfortran -m32" MPI_FC="mpif90 -m32" ...
> >
> >
> > Please let me know when you find a combination of flags which works.
> >
> > As you use the "with_mpi_prefix" option in your config file, all other
> > MPI options are useless. Try to rebuild after commenting all of them, as
> > it seems that your compiler has been properly detected.
> >
> > Best regards,
> >
> > Yann.
> >
> > --
> > Yann Pouillon                 Donostia International Physics Center
> > Tel: (+34) 943 01 54 23       Paseo Manuel de Lardizabal, 4
> > Fax: (+34) 943 01 56 00       20018 DONOSTIA-SAN SEBASTIÁN (Gipuzkoa)
> > Web: http://dipc.ehu.es/      España
> >


--
Pierre-Matthieu Anglade