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- From: gilles zerah <gilles.zerah@wanadoo.fr>
- To: forum@abinit.org
- Subject: Re: [abinit-forum] Parallelization over bands/fft
- Date: Sat, 02 Jun 2007 10:43:55 +0200
Dear Maurice,
The best distribution of npbands and npfft depends presumably upon the implementation of MPI you are using and of many
other parameters. Now, it should work for this distribution, but the case npfft=1 is treated differently.
Is it possible you post your input file?
Gilles
Dear all,
I noticed strange behavior while using the bands/fft parallelization features of abinip (compiled with -DMPI_FFT preprocessor flag),
running on an SGI Altix system with 16 CPU´s.
The calculation in question involves a geometry optimization using only the gamma point:
1) The first calculation was run using the parameters:
npbands=8, npfft=2
This calculation runs fine and the geometry optimization converges without any trouble.
2) Then I tried a different distribution, using the parameters
npbands=16, npfft=1
According to the documentation, this should be more efficient than the first choice.
But while running this calculation something strange happens. After a while, only a few
of the 16 CPU´s are actually processing, with the remainder in "uninterruptable sleep".
This already occurs during the first SCF cycle, effectively interrupting the progress of
the calculation.
Any ideas?
Cheers,
Maurice
- Parallel GW Problem, Maurice de Koning, 06/01/2007
- Re: [abinit-forum] Parallel GW Problem, Fabien Bruneval, 06/01/2007
- Parallelization over bands/fft, Maurice de Koning, 06/01/2007
- Re: [abinit-forum] Parallelization over bands/fft, gilles zerah, 06/02/2007
- Re: [abinit-forum] Parallelization over bands/fft, Maurice de Koning, 06/04/2007
- Re: [abinit-forum] Parallelization over bands/fft, Gilles Zerah, 06/04/2007
- Re: [abinit-forum] Parallelization over bands/fft, Xavier Gonze, 06/04/2007
- Re: [abinit-forum] Parallelization over bands/fft, gilles zerah, 06/04/2007
- Re: [abinit-forum] Parallelization over bands/fft, Gilles Zerah, 06/04/2007
- Re: [abinit-forum] Parallelization over bands/fft, Maurice de Koning, 06/04/2007
- Re: [abinit-forum] Parallelization over bands/fft, gilles zerah, 06/02/2007
- Parallelization over bands/fft, Maurice de Koning, 06/01/2007
- Re: [abinit-forum] Parallel GW Problem, Deyu Lu, 06/01/2007
- Re: [abinit-forum] Parallel GW Problem, Fabien Bruneval, 06/01/2007
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