forum@abinit.org
Subject: The ABINIT Users Mailing List ( CLOSED )
List archive
- From: "Jess Kondor" <kondor.jess@gmail.com>
- To: forum@abinit.org
- Subject: a problem with geometry builder
- Date: Mon, 6 Aug 2007 12:45:12 -0500
- Domainkey-signature: a=rsa-sha1; c=nofws; d=gmail.com; s=beta; h=received:message-id:date:from:to:subject:mime-version:content-type; b=dhfFneAYR55Y/wNTCr82p3bWzGtygc9V//G5GKnNSk95YspqGjlK1L1A+BIHFSqRAPyEssihzdOPBTE6Kd1HHm7abrn/eoB11Ogw+bjPPiFKQQQiUAr3CyeI+Ww1jGNvqh6mly+Zi5Q6Ycy8vf8qpMWOL1YPXHzJZjGA6vG9lzU=
Dear all,
I tried to use abinit geometry optimizer to build whole structure using crystallographic data. I have:
BiMnO3, C2 group (#5) , volume = 491.7 Ang^3
a = 9.854 , b = 5.606 , c = 9.532 (Ang) , alpha = gamma= 90.0 ; beta=110.60
11
Mn1 Mn 4c 0.254 0.062 0.757
Bi2 Bi 4c 0.359 0.1 0.115
Mn3 Mn 2a 0.0 0.0 0.0
O4 O 4c 0.144 0.257 0.106
O5 O 4c 0.346 0.363 0.415
O6 O 4c 0.365 0.276 0.915
O7 O 4c 0.1 0.015 0.838
O8 O 4c 0.4 0.169 0.672
Mn9 Mn 2b 0.5 0.096 0.5
Bi10 Bi 4c 0.135 0.037 0.372
O11 O 4c 0.149 0.405 0.63
the corresponding part of the input file is :
spgroup 5
brvltt -1
acell 9.854 5.606 9.532 Angstr
angdeg 90.0 110.60 90.0
ntypat 3
natom 20
natrd 11
typat 2*1 3*2 6*3
xred
0.359 0.1 0.115
0.135 0.037 0.372
0.0 0.0 0.0
0.254 0.062 0.757
0.5 0.096 0.5
0.144 0.257 0.106
0.346 0.363 0.415
0.365 0.276 0.915
0.1 0.015 0.838
0.4 0.169 0.672
0.149 0.405 0.63
I see in the output file:
Symmetries : space group C2 (# 5); Bravais mC (1-face-center monocl.)
but the unit cell volume is almost twice smaller and the angles are strange:
Real(R)+Recip(G) space primitive vectors, cartesian coordinates (Bohr,Bohr^-1):
R(1)= 9.0064347 5.2959575 0.0000000 G(1)= 0.0555159 0.0944116 0.0208670
R(2)= -9.0064347 5.2959575 0.0000000 G(2)= -0.0555159 0.0944116 -0.0208670
R(3)= -6.5484460 0.0000000 17.4218583 G(3)= 0.0000000 0.0000000 0.0573992
Unit cell volume ucvol= 1.6619650E+03 bohr^3
Angles (23,13,12)= 7.23445051E+01 1.07655495E+02 1.19087300E+02 degrees
V = ~1661 bohr^3 = ~ 246 Ang^3
Did I miss something?
Thanks,
jess
- a problem with geometry builder, Jess Kondor, 08/06/2007
- Re: [abinit-forum] a problem with geometry builder, Anglade Pierre-Matthieu, 08/06/2007
- Re: [abinit-forum] a problem with geometry builder, Anglade Pierre-Matthieu, 08/06/2007
- Re: [abinit-forum] a problem with geometry builder, Jess Kondor, 08/06/2007
- Re: [abinit-forum] a problem with geometry builder, Anglade Pierre-Matthieu, 08/06/2007
- Re: [abinit-forum] a problem with geometry builder, Anglade Pierre-Matthieu, 08/06/2007
Archive powered by MHonArc 2.6.16.