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Re: [abinit-forum] computer cluster for parallel computing


Chronological Thread 
  • From: Nicola Marzari <marzari@mit.edu>
  • To: forum@abinit.org
  • Subject: Re: [abinit-forum] computer cluster for parallel computing
  • Date: Sat, 18 Aug 2007 14:50:26 -0400
  • Organization: Massachusetts Institute of Technology



Also, make sure you really need quad-cores. I've tested other plane-wave
electronic structure codes, and never found a case when the quad cores
were justified, for the marginal increase of performance compared to two cores - you usually saturate the memory bus very quickly, even with one core.

This is even more relevant when you factor in the true costs of air
conditioning and electricity.

nicola


Xiulin Ruan wrote:
Thanks a lot for the information. Also, what is the proper amount of memory
per core? Is 4GB good enough?

Thanks,

Xiulin

-----Original Message-----
From: Anglade Pierre-Matthieu [mailto:anglade@gmail.com]
Sent: Friday, August 17, 2007 3:41 PM
To: forum@abinit.org
Subject: Re: [abinit-forum] computer cluster for parallel computing

Hi,

Two partial answers for your question:
- I have never done any benchmarking but infiniband works very well
for Abinit on "lemaitre" the super computer of the CISM
- You will find a detailed performance analysis by Torsten Hoefler
with two different kinds of interconnection here :
www.unixer.de/publications/img/hoefler-sfb05.pdf
This might be usefull for your decision.

Regards

PMA

On 8/17/07, Xiulin Ruan <ruan@purdue.edu> wrote:
Dear all,

We are building a computer cluster to run abinit in the parallel mode.
We
are gonna have two or four nodes, and each node will be dual-processor,
quad-core. We wonder if the high speed InfiniBand connection is worthy
to
have. Our current jobs include calculating band structure and optical
properties of carbon nanotubes and TiO2. Any suggestions?

Many thanks,

Xiulin


--
---------------------------------------------------------------------
Prof Nicola Marzari Department of Materials Science and Engineering
13-5066 MIT 77 Massachusetts Avenue Cambridge MA 02139-4307 USA
tel 617.4522758 fax 2586534 marzari@mit.edu http://quasiamore.mit.edu



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