The ABINIT Users Mailing List ( CLOSED )

[Anurag Chaudhry <anuragchaudhry@yahoo.co.uk>]

Hello,

I am trying to install Abinit 5.6.2 on a 64 bit Intel linux cluster (uname -r = 2.6.9-34.ELsmp) with mpi support. The cluster has IFC (9.0.033) for fortran compilation.

I get the following error when tried typing the command "make" after running the the "./configure" script.

Can anyone suggest a way to solve this issue ?

I have compiled Abinit 5.5.3 most recently on this cluster and it worked just fine.

thanks,
Anurag



------------------------------------portion of the screen log generated when make is executed --------------------

ar rc lib17ddb.a alignph.o asrif9.o axial9.o bigbx9.o canat9.o canct9.o chki8.o chkin9.o chkr8.o chkrp9.o cmpar8.o complete_gkk.o diel9.o dist9.o dtchi.o dtech9.o dymfz9.o elast9.o electrooptic.o elphon.o ewald9.o ftgam.o ftgkk.o ftiaf9.o gamma9.o get_all_gkq.o get_all_gkk2.o get_fs_kpts.o gtblk9.o gtdyn9.o hybrid9.o ifclo9.o init8.o init9.o instr9.o integrate_gamma.o integrate_gamma_tr.o interpolate_gkk.o invars9.o mka2f.o mka2f_tr.o mkfskgrid.o mkfsqgrid.o mkifc9.o mkkptrank.o mkphdos.o mkph_linwid.o mk_irredpert.o mkqptequiv.o nanal9.o normsq_gkq.o order_fs_kpts.o outlwf9.o outvars9.o piezo9.o ramansus.o rchkgsheader.o read_gkk.o relaxpol.o rdddb9.o rsiaf9.o sortph.o symdm9.o thm9.o wght9.o inpphon.o test_ftgkk.o completeperts.o symgamma.o fxgkkphase.o get_all_gkr.o nmsq_gam_sumfs.o nmsq_gam.o nmsq_pure_gkk.o nmsq_pure_gkk_sumfs.o eli_app_m_1d.o eli_diag_m_1d.o eli_lambda_1d.o eli_m_iter_1d.o eli_z_1d.o eliashberg_1d.o mknesting.o bfactor.o printxsf.o thmeig.o wstoconv.o outelph.o mka2fQgrid.o read_el_veloc.o get_gkk_qpt_tr.o setup_phon_ds.o clean_phon_ds.o
ranlib lib17ddb.a
make[3]: Leaving directory `/clusterfs/baldur/home/anurag/abinit-5.6.2/src/17ddb'
Making all in 18seqpar
make[3]: Entering directory `/clusterfs/baldur/home/anurag/abinit-5.6.2/src/18seqpar'
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o berryphase_new.o berryphase_new.F90
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o cgwf.o cgwf.F90
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o inwffil.o inwffil.F90
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o iofn1.o iofn1.F90
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o iofn2.o iofn2.F90
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o loper3.o loper3.F90
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o lobpcgccwf.o lobpcgccwf.F90
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o lobpcgccIIwf.o lobpcgccIIwf.F90
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o lobpcgwf.o lobpcgwf.F90
mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs   -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2 -extend_source -vec-report0 -c -o lobpcgIIwf.o lobpcgIIwf.F90
fortcom: Severe: **Internal compiler error: segmentation violation signal raised** Please report this error along with the circumstances in which it occurred in a Software Problem Report.  Note: File and line given may not be explicit cause of this error.

compilation aborted for lobpcgIIwf.F90 (code 3)
make[3]: *** [lobpcgIIwf.o] Error 3
make[3]: Leaving directory `/clusterfs/baldur/home/anurag/abinit-5.6.2/src/18seqpar'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/clusterfs/baldur/home/anurag/abinit-5.6.2/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/clusterfs/baldur/home/anurag/abinit-5.6.2'
make: *** [all] Error 2
------------------------------------------