The ABINIT Users Mailing List ( CLOSED )

["Anglade Pierre-Matthieu" <anglade@gmail.com>]

Hi,

Unfortunately, as most other fortran compilers, IFC has some bugs. And
you have just encountered one of them. There is few solutions :
- try to compile the the problematic file with different options (for
instance """mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs
-I../../src/defs
-I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O1
-extend_source -vec-report0 -c -o lobpcgIIwf.o lobpcgIIwf.F90""")
until it work and then continue
- try an other compiler (even a version change could be enough)
- at the configure stage you can also change globaly the optimisation options.

regards

PMA

On Thu, Sep 25, 2008 at 6:09 PM, Anurag Chaudhry
<anuragchaudhry@yahoo.co.uk> wrote:
> Hello,
>
> I am trying to install Abinit 5.6.2 on a 64 bit Intel linux cluster (uname
> -r = 2.6.9-34.ELsmp) with mpi support. The cluster has IFC (9.0.033) for
> fortran compilation.
>
> I get the following error when tried typing the command "make" after running
> the the "./configure" script.
>
> Can anyone suggest a way to solve this issue ?
>
> I have compiled Abinit 5.5.3 most recently on this cluster and it worked
> just fine.
>
> thanks,
> Anurag
>
>
>
> ------------------------------------portion of the screen log generated when
> make is executed --------------------
>
> ar rc lib17ddb.a alignph.o asrif9.o axial9.o bigbx9.o canat9.o canct9.o
> chki8.o chkin9.o chkr8.o chkrp9.o cmpar8.o complete_gkk.o diel9.o dist9.o
> dtchi.o dtech9.o dymfz9.o elast9.o electrooptic.o elphon.o ewald9.o ftgam.o
> ftgkk.o ftiaf9.o gamma9.o get_all_gkq.o get_all_gkk2.o get_fs_kpts.o
> gtblk9.o gtdyn9.o hybrid9.o ifclo9.o init8.o init9.o instr9.o
> integrate_gamma.o integrate_gamma_tr.o interpolate_gkk.o invars9.o mka2f.o
> mka2f_tr.o mkfskgrid.o mkfsqgrid.o mkifc9.o mkkptrank.o mkphdos.o
> mkph_linwid.o mk_irredpert.o mkqptequiv.o nanal9.o normsq_gkq.o
> order_fs_kpts.o outlwf9.o outvars9.o piezo9.o ramansus.o rchkgsheader.o
> read_gkk.o relaxpol.o rdddb9.o rsiaf9.o sortph.o symdm9.o thm9.o wght9.o
> inpphon.o test_ftgkk.o completeperts.o symgamma.o fxgkkphase.o get_all_gkr.o
> nmsq_gam_sumfs.o nmsq_gam.o nmsq_pure_gkk.o nmsq_pure_gkk_sumfs.o
> eli_app_m_1d.o eli_diag_m_1d.o eli_lambda_1d.o eli_m_iter_1d.o eli_z_1d.o
> eliashberg_1d.o mknesting.o bfactor.o printxsf.o thmeig.o wstoconv.o
> outelph.o mka2fQgrid.o read_el_veloc.o get_gkk_qpt_tr.o setup_phon_ds.o
> clean_phon_ds.o
> ranlib lib17ddb.a
> make[3]: Leaving directory
> `/clusterfs/baldur/home/anurag/abinit-5.6.2/src/17ddb'
> Making all in 18seqpar
> make[3]: Entering directory
> `/clusterfs/baldur/home/anurag/abinit-5.6.2/src/18seqpar'
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o berryphase_new.o berryphase_new.F90
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o cgwf.o cgwf.F90
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o inwffil.o inwffil.F90
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o iofn1.o iofn1.F90
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o iofn2.o iofn2.F90
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o loper3.o loper3.F90
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o lobpcgccwf.o lobpcgccwf.F90
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o lobpcgccIIwf.o lobpcgccIIwf.F90
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o lobpcgwf.o lobpcgwf.F90
> mpif90 -DHAVE_CONFIG_H -I. -I../.. -I../../src/defs -I../../src/defs
> -I/clusterfs/baldur/home/anurag/abinit-5.6.2/plugins/bigdft    -g -O2
> -extend_source -vec-report0 -c -o lobpcgIIwf.o lobpcgIIwf.F90
> fortcom: Severe: **Internal compiler error: segmentation violation signal
> raised** Please report this error along with the circumstances in which it
> occurred in a Software Problem Report.  Note: File and line given may not be
> explicit cause of this error.
>
> compilation aborted for lobpcgIIwf.F90 (code 3)
> make[3]: *** [lobpcgIIwf.o] Error 3
> make[3]: Leaving directory
> `/clusterfs/baldur/home/anurag/abinit-5.6.2/src/18seqpar'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/clusterfs/baldur/home/anurag/abinit-5.6.2/src'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/clusterfs/baldur/home/anurag/abinit-5.6.2'
> make: *** [all] Error 2
> ------------------------------------------
>
>



-- 
Pierre-Matthieu Anglade