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- From: Yann Pouillon <yann.pouillon@ehu.es>
- To: forum@abinit.org
- Subject: Re: [abinit-forum] Large-cell calculations
- Date: Sat, 21 Nov 2009 22:51:24 +0100
Hi,
Latévi Max LAWSON DAKU <Max.Lawson@unige.ch> ha escrito:
I would like to use the band/FFT/k-point parallelisation, and several
distributions have been proposed for the number of processors.
The distributions retained read (npkpt, npband, npfft)=(2, 150, x),
with x a positive integer.
But the calculations tend to be extremely slow even when using
3000 cpus. In this last case, the code actually segfaults after having
output:
ITER STEP NUMBER 1
vtorho : nnsclo_now= 2, note that nnsclo,dbl_nnsclo,istep= 0 0 1
**** In vtorho for isppol= 1
starting lobpcg, with nblockbd,mpi_enreg%nproc_band 1 150
condition number of the Gram matrix= 59476636.484308563
Lobpcgccwf: restart performed
I have the same problem with nanotubes using PAW on a different architecture. The segfault disappears when I reduce the cell size (which in absolute I don't want). I've been trying to change the following parameters:
* increasing nband
* varying npband, npfft, bandpp
* increasing diecut, dielam
* varying iprcel, iprcch
* increasing nnsclo
* trying both metallic and non-metallic nanotubes
I also very carefully checked the positions of the atoms. But the electronic ground-state SCF never converges.
I'm pretty sure there is a memory leak somewhere, but I was unable to locate it. Smells to me like a problem in the preconditioning, but may be elsewhere.
If somebody has more insight about this, I would greatly appreciate any hint.
Best regards,
Yann.
--
Yann Pouillon European Theoretical Spectroscopy Facility (ETSF)
Tel: (+34) 943 01 83 94 Centro Joxe Mari Korta, Avenida de Tolosa, 72
Fax: (+34) 943 01 83 90 20018 Donostia-San Sebastián (Gipuzkoa)
Web: http://www.etsf.es/ España
- [abinit-forum] Large-cell calculations, Latévi Max LAWSON DAKU, 11/21/2009
- Re: [abinit-forum] Large-cell calculations, Yann Pouillon, 11/21/2009
- Re: [abinit-forum] Large-cell calculations, Latévi Max LAWSON DAKU, 11/22/2009
- Re: [abinit-forum] Large-cell calculations, 6671011, 11/22/2009
- Re: [abinit-forum] Large-cell calculations, Latévi Max LAWSON DAKU, 11/22/2009
- Re: [abinit-forum] Large-cell calculations, BOTTIN Francois, 11/23/2009
- Re: [abinit-forum] Large-cell calculations, Yann Pouillon, 11/25/2009
- Re: [abinit-forum] Large-cell calculations, BOTTIN Francois, 11/25/2009
- Re: [abinit-forum] Large-cell calculations, Yann Pouillon, 11/25/2009
- Re: [abinit-forum] Large-cell calculations, BOTTIN Francois, 11/25/2009
- Re: [abinit-forum] Large-cell calculations, Yann Pouillon, 11/25/2009
- Re: [abinit-forum] Large-cell calculations, Yann Pouillon, 11/21/2009
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