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- From: mamikon Gulian <mamikon.armen.gulian@gmail.com>
- To: forum@abinit.org
- Subject: Re: [abinit-forum] Re: Memory Corruption with abinip/abinis
- Date: Mon, 8 Mar 2010 12:15:56 -0500
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Thanks for your rapid suggestions. I have 128 Gb of memory for this calculation, but I am willing to believe that the problem is with kssform=1. However, I thought there were downsides with using kssform=3, namely that there will be " a restricted number of states".
Any case, its the only option here.
Once again thanks,
Mamikon
On Mon, Mar 8, 2010 at 11:47 AM, Matteo Giantomassi <Matteo.Giantomassi@uclouvain.be> wrote:
> Hi Mamikon,It's due to a wrap-around error in memkss.
>
> It says " - " ?
> Anyway, it seems that the code have a case in which the
> memory needed is negative. Maybe you can search
> that part on the code and know when this case is on.
>
It will be solved in v6.1. It's not a serious problem and it's not
the cause of the malloc error.
Use kssform=3 as suggested by Fabien otherwise the KSS
generations is unfeasible.
Matteo
> Regards
>
> On Mon, Mar 8, 2010 at 5:13 PM, mamikon Gulian <
> mamikon.armen.gulian@gmail.com> wrote:
>
>> Strange things in the log file:
>> *
>> Total amount of disk space required by _KSS file = -450.94 Mb.*
>> Subdivided into :
>> Header = 0.82 Mb.
>> KB elements = 108.62 Mb.
>> * Wavefunctions (PW) = -560.38 Mb.*
>> PAW projectors = 0.00 Mb.
>>
>>
>> Opening file for KS structure output: nt-nonscf_o_KSS
>> number of Gamma centered plane waves 53927
>> number of Gamma centered shells 53927
>> number of bands 52235
>> maximum angular momentum components 3
>> number of symmetry operations 1 (without inversion)
>> * g( 1)= 0 0 0
>> * g( 2)= 1 0 0
>> * g( 3)= -1 0 0
>> * g( 4)= 0 1 0
>> * g( 5)= 0 -1 0
>> * g( 6)= 1 1 0
>> * g( 7)= -1 1 0
>> * g( 8)= 1 -1 0
>> * * g(****)=-13 2-11
>> * g(****)= 2 13-11
>> * g(****)= -2 13-11
>> * g(****)= 2-13-11
>> * g(****)= -2-13-11
>> * g(****)= 13 -2-11
>> * g(****)=-13 -2-11*
>> -P-0000
>> -P-0000 k-point 1
>> -P-0000 Calculating <G|H|G'> elements
>>
>>
>> On Mon, Mar 8, 2010 at 11:00 AM, mamikon Gulian <
>> mamikon.armen.gulian@gmail.com> wrote:
>>
>>> Dear ABINITers,
>>>
>>> I got the following unexpected error with ABINIT 5.8.4. This occurs
>>> during
>>> a non-scf KSS file calculation, after the program writes the g-vectors
>>> to
>>> the file and begins to calculate < G | H | G > elements.
>>>
>>> Running with mpi (Open MPI 1.4.1), 11 cpus:* glibc detected *** abinip:
>>> malloc(): memory corruption: 0x0000000002e0ac50 ***
>>> *
>>> I though it was a bug with MPI, so I tried a sequential run: * ***
>>> glibc
>>> detected *** abinis: malloc(): memory corruption: 0x0000000004d80260
>>> ****
>>>
>>> I never got such an error before. Anyone have an idea?
>>>
>>> Thanks
>>>
>>> Mamikon
>>>
>>
>>
>
>
> --
> Atte.
> Keitel Cervantes Salguero
>
- [abinit-forum] Memory Corruption with abinip/abinis, mamikon Gulian, 03/08/2010
- [abinit-forum] Re: Memory Corruption with abinip/abinis, mamikon Gulian, 03/08/2010
- Re: [abinit-forum] Re: Memory Corruption with abinip/abinis, Fabien Bruneval, 03/08/2010
- Re: [abinit-forum] Re: Memory Corruption with abinip/abinis, Keitel Cervantes Salguero, 03/08/2010
- Re: [abinit-forum] Re: Memory Corruption with abinip/abinis, Matteo Giantomassi, 03/08/2010
- Re: [abinit-forum] Re: Memory Corruption with abinip/abinis, mamikon Gulian, 03/08/2010
- Re: [abinit-forum] Re: Memory Corruption with abinip/abinis, Matteo Giantomassi, 03/08/2010
- [abinit-forum] Re: Memory Corruption with abinip/abinis, mamikon Gulian, 03/08/2010
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