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- From: uludoganmustafa@yahoo.com
- To: forum@abinit.org
- Subject: abinip crash on MAC G5
- Date: Wed, 27 Jul 2005 21:59:36 +0200
Hi,
I try to calculate the phonon frequencies of BaTiO3 using an input file
similar to Eric J. Walter's mail about anaddb calculation of a metallic
system
"Re: [abinit-forum] ASR when occopt>2 in anaddb? " in June 2005.
But when I try to run it with a almost a similar input file, during response
function calculation, parallel version 4.6.2 (I am not sure of the serial
version also)
crashes. I use a MAC G5 Darwin system.
Standart error message is
...
1525-093 The CLOSE statement cannot be processed because the CLOSE statement
is not allowed on unit 0, which is connected to standard error. The program
will recover by ignoring the CLOSE statement.
1525-093 The CLOSE statement cannot be processed because the CLOSE statement
is not allowed on unit 0, which is connected to standard error. The program
will recover by ignoring the CLOSE statement.
1525-014 The I/O operation on unit 9 cannot be completed because an errno
value of 1 (Operation not permitted) was received while opening the file.
The program will stop.
1525-014 The I/O operation on unit 9 cannot be completed because an errno
value of 1 (Operation not permitted) was received while opening the file.
The program will stop.
1525-014 The I/O operation on unit 9 cannot be completed because an errno
value of 1 (Operation not permitted) was received while opening the file.
The program will stop.
1525-014 The I/O operation on unit 9 cannot be completed because an errno
value of 6 (Device not configured) was received while opening the file. The
program will stop.
1:NOTICE:bounce_buf[SEND]=0, bounce_buf[RECV]=0
0:NOTICE:busy tokens =3
1: regcache_miss=218090(42.47 %) regcache_hit=295436(57.53 %)
1: send_queued=0 ok_to_send_queued=0
1: done_send_s=3004 ok_to_send_r=3004
1: done_send_r=3004 ok_to_send_s=3004
Yours Sincerely
Mustafa Uludogan
Chemical Engineering Department, TAMU
INPUT FILE
# BaTiO3 molecule
#
# In this input file, the location of the information on this or that line
# is not important : a keyword is located by the parser, and the related
# information should follow.
# The "#" symbol indicate the beginning of a comment : the remaining
# of the line will be skipped.
#Define the different datasets
ndtset 5 # 20 datasets
#Definition of the planewave basis set
ecut 42 # Maximal plane-wave kinetic energy cut-off, in Hartree
#Definition of the unit cell
acell 4.00 4.00 4.00 Angstr # The keyword "acell" refers to the
# lengths of the primitive vectors (in eV)
angdeg 90 90 90
occopt 0 # Gaussian smearing, corresponding to the 0 order
Hermite polynomial of Methfessel and Paxton.
# o Smeared delta function :
1.0d0*exp(-xx**2)/sqrt(pi)
occ 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00
2.00 2.00 2.00 2.00 2.00 2.00 2.00 2.00 0.00 0.00 0.00 0.00
0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
0.00 0.00 0.00 0.00
#tphysel 1500 Kelvin
#tsmear 0.020 # Gives the broadening of occupation numbers occ, in
the metallic cases (occopt=3, 4, 5, 6 and 7).
#tphysel 1200 K
prtden1 1
#Definition of the atom types
ntypat 3 # There are three types of atom
znucl 56 22 8 # The keyword "znucl" refers to the atomic number of the
# possible type(s) of atom. The pseudopotential(s)
# mentioned in the "files" file must correspond
# to the type(s) of atom. Here, the only type is Hydrogen.
#Definition of the atoms
natom 5 # There are five atoms
typat 1 2 3 3 3 # They both are of type 1, that is, Hydrogen
xred # This keyword indicate that the location of the atoms
# will follow, one triplet of number for each atom
0.0000000000000000 0.0000000000000000 0.0000000000000000 # Triplet
giving the reduced coordinates of atom 1
0.5000000000000000 0.5000000000000000 0.5000000000000000 # Triplet
giving the reduced coordinates of atom 2
0.0000000000000000 0.5000000000000000 0.5000000000000000 # Triplet
giving the reduced coordinates of atom 3
0.5000000000000000 0.0000000000000000 0.5000000000000000 # Triplet
giving the reduced coordinates of atom 4
0.5000000000000000 0.5000000000000000 0.0000000000000000 # Triplet
giving the reduced coordinates of atom 5
#Definition of the k-point grid
prtvol 10
kptopt 3 #1=> rely on ngkpt or kptrlatt, as well as on nshiftk and
shiftk to set up the k points.
# Take fully into account the symmetry to generate the k
points in the Irreducible Brillouin Zone only.
# (This is the usual mode for GS calculations)
nshiftk 1 # This parameter gives the number of shifted grids to be
used concurrently to generate the full grid of k points.
#It can be used with primitive grids defined either from
ngkpt or kptrlatt.
# The maximum allowed value of nshiftk is 8. The values of
the shifts are given by shiftk.
shiftk 0.5 0.5 0.5 # When the primitive vectors of the lattice do NOT form a
FCC or a BCC lattice,
# the usual (shifted) Monkhorst-Pack grids are formed by
using nshiftk=1 and shiftk 0.5 0.5 0.5 .
# This is often the preferred k point sampling. For a
non-shifted Monkhorst-Pack grid,
# use nshiftk=1 and shiftk 0.0 0.0 0.0 , but there is
little reason to do that.
ngkpt 8 8 8 # Used when kptopt>=0, if kptrlatt has not been defined
(kptrlatt and ngkpt are exclusive of each other).
# Its three positive components give the number of k
points of Monkhorst-Pack grids
# (defined with respect to primitive axis in reciprocal
space) in each of the three dimensions.
# ngkpt will be used to generate the corresponding
kptrlatt input variable.
# The use of nshiftk and shiftk, allows to generate
shifted grids, or Monkhorst-Pack grids defined
# with respect to conventional unit cells.
#Definition of the SCF procedure
nstep 100 # Maximal number of SCF cycles
#toldfe 1.0d-6 # Will stop when, twice in a row, the difference
# between two consecutive evaluations of total energy
# differ by less than toldfe (in eV)
iscf 5 #=5 => SCF cycle, CG based on the minim. of the energy
ixc 11 # 11=> GGA, Perdew-Burke-Ernzerhof GGA functional
diemac 1.0 # Although this is not mandatory, it is worth to
# precondition the SCF cycle. The model dielectric
#diemix 0.5 # function used as the standard preconditioner
# is described in the "dielng" input variable section.
# Here, we follow the prescriptions for molecules
# in a big box
nbdbuf 2
nband 40 # Gives number of bands, occupied plus possibly
unoccupied,
# parallelization
localrdwf 1
wfoptalg 1
nbdblock 2
tolvrs1 1.0d-10
#DATASET 2
rfelfd2 2
rfdir2 1 1 1
nqpt2 1
qpt2 0.00 0.00 0.00
getwfk2 1
kptopt2 2
tolvrs2 1.0d-18
iscf2 5
#DATASET 3
rfelfd3 3
rfphon3 1
rfatpol3 1 5
rfdir3 1 1 1
nqpt3 1
qpt3 0.00 0.00 0.00
getwfk3 1
getddk3 2
kptopt3 2
tolvrs3 1.0d-18
iscf3 5
#DATASET 4
### Non-self consistent Ground State Calculation
nqpt4 1
qprt4 0.00 0.50 0.50
getwfk4 1
getden4 1
kptopt4 3
tolwfr4 1.0d-10
iscf4 -2
#DATASET 5
### Response Function Calculation
rfphon5 1
rfatpol5 1 5
rfdir5 1 1 1
nqpt5 1
qpt5 0.00 0.50 0.50
getwfk5 1
getwfq5 4
kptopt5 3
tolvrs5 1.0d-18
iscf5 5
- abinip crash on MAC G5, uludoganmustafa, 07/27/2005
- Re: [abinit-forum] abinip crash on MAC G5, verstraete, 07/28/2005
- Re: [abinit-forum] abinip crash on MAC G5, Mustafa Uludogan, 07/28/2005
- Re: [abinit-forum] abinip crash on MAC G5, verstraete, 07/28/2005
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