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- From: Francois Bottin <Francois.Bottin@cea.fr>
- To: forum@abinit.org
- Subject: Re: [abinit-forum] NaN with npband 2 and when nband > VB+2
- Date: Fri, 02 Feb 2007 16:35:44 +0100
Dear Joe,
As Guillaume said, this part is under development. Some functionalities of Abinit are not yet available in the framework of BandFFT as the Non-self-consistent calculations (thank you Guillaume for this point), but also I/O, spin polarization... It remains a lot of work. You can fix one of these points if you want :-) !
I don't really understand your problem. You use a number of band processors (npband) higher than the number of valence bands in your system (nband). Note that, if it is the case, the number of band and FFT processors (npband and npfft) HAVE TO BE COMMENSURATE with the number of bands and FFT planes in each direction (nband and ngfft).
Regards
Francois
Geoffrey Stenuit wrote:
Dear Abinit users,
Running abinit-5.2.4 compiled with pathscale (pathf90) on AMD Opteron (64bit), i experience some instabilities with the calculations of the band structure at k=0 when the npfft or npband is different from 1 and wfoptalg set to 4. In particular, i found that the eigenvalues become "NaN" when the number of band that i request at this Gamma point is larger than the number of Valence band + 2 (i.e 128+2=130 in my GaAsN 64-atom supercell). On the other hand, when i request nband 129 or 130, the programm is giving the correct eigenvalues (but i need to analyse more than 130 bands).
Do you think it is a bug in abinit, or an error when i compiled it, or ?
Please find in attachement the input file i submitted.
Thank you for your help,
Regards,
Joe
------------------------------------------------------------------------
# Convergence with respect to the number of k points.
chkprim 0
# mgfft = 96 => nbr of processors: 1 or 2, 3, 4, 6, 8, 12, 16, 24,... ,48,96 ### Parallel FLAGS:
fftalg 401
wfoptalg 4 fft_opt_lob 2
npband 2
npfft 1 ## mgfft=40 => 1,2,4,5,10,20 and 40 are OK
iprcch 0
#Definition of the unit cell
#Definition of the unit cell
acell 3*2.1203311987E+01 # This is equivalent to
rprim 1.0 0.0 0.0 # FCC primitive vectors (to be scaled by acell)
0.0 1.0 0.0
0.0 0.0 1.0
xcart # This keyword indicate that the location of the atoms
-1.74374822972885E-19 1.80698275312510E-19 1.09334001556395E-19
-1.74374822972885E-19 1.80698275312510E-19 1.06016559933404E+01
-1.74374822972885E-19 1.06016559933404E+01 1.09334001556395E-19
-1.74374822972885E-19 1.06016559933404E+01 1.06016559933404E+01
1.06016559933404E+01 1.80698275312510E-19 1.09334001556395E-19
1.06016559933404E+01 1.80698275312510E-19 1.06016559933404E+01
1.06016559933404E+01 1.06016559933404E+01 1.09334001556395E-19
1.06016559933404E+01 1.06016559933404E+01 1.06016559933404E+01
9.68225628470105E-03 5.16468510169365E+00 5.16468510169366E+00
-9.68225628470105E-03 5.16468510169365E+00 1.60386268849871E+01
-9.68225628470105E-03 1.60386268849870E+01 5.16468510169366E+00
9.68225628470105E-03 1.60386268849870E+01 1.60386268849871E+01
1.06013045001119E+01 5.29123892677001E+00 5.29123892677001E+00
1.06020074865687E+01 5.29123892677001E+00 1.59120730599107E+01
1.06020074865687E+01 1.59120730599107E+01 5.29123892677001E+00
1.06013045001119E+01 1.59120730599107E+01 1.59120730599107E+01
5.16468510169366E+00 9.68225628470109E-03 5.16468510169366E+00
5.16468510169366E+00 -9.68225628470105E-03 1.60386268849871E+01
5.29123892677001E+00 1.06013045001119E+01 5.29123892677001E+00
5.29123892677001E+00 1.06020074865687E+01 1.59120730599107E+01
1.60386268849871E+01 -9.68225628470105E-03 5.16468510169366E+00
1.60386268849871E+01 9.68225628470109E-03 1.60386268849871E+01
1.59120730599107E+01 1.06020074865687E+01 5.29123892677001E+00
1.59120730599107E+01 1.06013045001119E+01 1.59120730599107E+01
5.16468510169366E+00 5.16468510169365E+00 9.68225628470109E-03
5.29123892677001E+00 5.29123892677001E+00 1.06013045001119E+01
5.16468510169366E+00 1.60386268849870E+01 -9.68225628470106E-03
5.29123892677001E+00 1.59120730599107E+01 1.06020074865687E+01
1.60386268849871E+01 5.16468510169365E+00 -9.68225628470106E-03
1.59120730599107E+01 5.29123892677001E+00 1.06020074865687E+01
1.60386268849871E+01 1.60386268849870E+01 9.68225628470109E-03
1.59120730599107E+01 1.59120730599107E+01 1.06013045001119E+01
7.88922678674774E+00 2.64420766012477E+00 7.88922678674772E+00
7.93032740139436E+00 2.64935519364036E+00 1.85539567930404E+01
7.95231990242752E+00 1.32509920842532E+01 7.95231990242752E+00
7.88922678674774E+00 1.33140851999330E+01 1.85591043265559E+01
1.85539567930404E+01 2.64935519364036E+00 7.93032740139436E+00
1.89681850257071E+01 2.23512696097355E+00 1.89681850257071E+01
1.85591043265559E+01 1.33140851999330E+01 7.88922678674772E+00
1.85539567930404E+01 1.32729845852864E+01 1.85539567930404E+01
2.23512696097355E+00 2.23512696097355E+00 2.23512696097355E+00
2.64935519364036E+00 2.64935519364036E+00 1.32729845852864E+01
2.64935519364036E+00 1.32729845852864E+01 2.64935519364037E+00
2.64420766012477E+00 1.33140851999330E+01 1.33140851999330E+01
1.32729845852864E+01 2.64935519364036E+00 2.64935519364037E+00
1.33140851999330E+01 2.64420766012477E+00 1.33140851999330E+01
1.33140851999330E+01 1.33140851999330E+01 2.64420766012476E+00
1.32509920842532E+01 1.32509920842532E+01 1.32509920842532E+01
2.64420766012477E+00 7.88922678674775E+00 7.88922678674772E+00
2.64935519364036E+00 7.93032740139436E+00 1.85539567930404E+01
2.64935519364036E+00 1.85539567930404E+01 7.93032740139436E+00
2.23512696097355E+00 1.89681850257071E+01 1.89681850257071E+01
1.32509920842532E+01 7.95231990242758E+00 7.95231990242752E+00
1.33140851999330E+01 7.88922678674775E+00 1.85591043265559E+01
1.33140851999330E+01 1.85591043265559E+01 7.88922678674772E+00
1.32729845852864E+01 1.85539567930404E+01 1.85539567930404E+01
7.88922678674774E+00 7.88922678674775E+00 2.64420766012476E+00
7.95231990242752E+00 7.95231990242758E+00 1.32509920842532E+01
7.93032740139436E+00 1.85539567930404E+01 2.64935519364037E+00
7.88922678674774E+00 1.85591043265559E+01 1.33140851999330E+01
1.85539567930404E+01 7.93032740139436E+00 2.64935519364037E+00
1.85591043265559E+01 7.88922678674775E+00 1.33140851999330E+01
1.89681850257071E+01 1.89681850257071E+01 2.23512696097355E+00
1.85539567930404E+01 1.85539567930404E+01 1.32729845852864E+01
# Second: The BS...
#getcell2 -1 # start from the previous acell values
#getxred2 -1 # start from the previous xred values
#prtwf 0 # No wavefunction output is provided
iscf -2 # no self-consistent calculations
getden -1 # because start with the previous computed density
kptopt 0 # read directly nkpt, kpt, kptnrm and wtk (corresponds to the usage before version 2.1) nband 132 # 6*32=192 ( 2atoms: 6 = 4 VB + 2 CB) en plus pour avoir la conduction
nkpt 1 #5 #nbre of kpts
kpt 0.00 0.00 0.00
tolwfr 1.0d-12
enunit 1 # Will output the eigenenergies in eV
#Definition of the atom types in the cristal
ntypat 3 # There are three types of atom
znucl 7 33 31 # The keyword "znucl" refers to the atomic number of the
# possible type(s) of atom. The pseudopotential(s)
# mentioned in the "files" file must correspond
# to the type(s) of atom. Here, the only type is Silicon.
#Definition of the atoms
natom 64 # There are 64 atoms
typat 1 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
2 2 2 2 2 2 2 2
3 3 3 3 3 3 3 3
3 3 3 3 3 3 3 3
3 3 3 3 3 3 3 3
3 3 3 3 3 3 3 3
#Definition of the planewave basis set
#ecut 20.0 # Maximal kinetic energy cut-off, in Hartree
ecut 25.0
#ecut 27.5625
#ecut3 30.0
#ecut4 35.0
#ecut 32.0
#Definition of the SCF procedure
nstep 60 # Maximal number of SCF cycles
#toldff 5.0d-6 # A value ten times smaller than tolmxf is suggested (for
example 5.0d-6 hartree/bohr)
toldfe 1.0d-10 # Will stop when, twice in a row, the difference diemac 12.0 # Although this is not mandatory, it is worth to
--
##############################################################
Francois Bottin tel: 01 69 26 41 73
CEA/DIF fax: 01 69 26 70 77
BP 12 Bruyeres-le-Chatel email: Francois.Bottin@cea.fr
##############################################################
- NaN with npband 2 and when nband > VB+2, geoffrey . stenuit, 02/02/2007
- Re: [abinit-forum] NaN with npband 2 and when nband > VB+2, Guillaume Dumont, 02/02/2007
- ecutsm\=0 in relax and RF calculations, Marcel Mohr, 02/02/2007
- Re: [abinit-forum] ecutsm\=0 in relax and RF calculations, Anglade Pierre-Matthieu, 02/02/2007
- Re: [abinit-forum] ecutsm\=0 in relax and RF calculations, Marcel Mohr, 02/03/2007
- Re: [abinit-forum] ecutsm\=0 in relax and RF calculations, Xavier Gonze, 02/03/2007
- Re: [abinit-forum] ecutsm\=0 in relax and RF calculations, Marcel Mohr, 02/05/2007
- Re: [abinit-forum] ecutsm\=0 in relax and RF calculations, Anglade Pierre-Matthieu, 02/02/2007
- <Possible follow-up(s)>
- NaN with npband 2 and when nband > VB+2, Geoffrey Stenuit, 02/02/2007
- Re: [abinit-forum] NaN with npband 2 and when nband > VB+2, Francois Bottin, 02/02/2007
- Re: ***SPAM*** Re: [abinit-forum] NaN with npband 2 and when nband > VB+2, Geoffrey Stenuit, 02/02/2007
- Re: [abinit-forum] NaN with npband 2 and when nband > VB+2, Francois Bottin, 02/02/2007
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