The ABINIT Users Mailing List ( CLOSED )

[matthieu verstraete <matthieu.jean.verstraete@gmail.com>]

Could you give some more details about how much memory you should be
using and how much you have on each node? The messages are pretty
clear: there is not enough memory and the job stops.

Could you also send us the 10 lines around :
getghc_cpp.f90, line 69
and
fourdp_cpp.f90, line 426

which should be in your build directory src/*/getghc_cpp.f90 and so
on. This could be a proper bug with a memory leak, so we also need
(please netiquette, guys) input output etc...

Matthieu

On Tue, Aug 4, 2009 at 5:02 PM, Ludwig, Christian<ludwigc@uni-mainz.de> wrote:
> In another case I get another error message:
>
> Pulay update with  7 previous iterations:
>  mixing of old trial potential : alpha(m:m-4)=   .412       .698       .129 
>      -.291       .319E-02
>
>  ITER STEP NUMBER    16
>  vtorho : nnsclo_now=  1, note that nnsclo,dbl_nnsclo,istep=  0 0 16
> -P-0000  leave_test : synchronization done...
>  vtorho: loop on k-points and spins done in parallel
>  Total charge density [el/Bohr^3]
> ,     Maximum=    1.4877E+00  at reduced coord.     .0313     .9531     
> .0156
> ,     Minimum=    1.1627E-03  at reduced coord.     .0000     .0000     
> .0000
> "fourdp_cpp.f90", line 426: 1525-108 Error encountered while attempting to 
> allocate a data object.  The program will stop.
> bm_list_13489: (82853.045200) wakeup_slave: unable to interrupt slave 0 pid 
> 13488
>
> ________________________________________
> Von: forum-owner@abinit.org [forum-owner@abinit.org] im Auftrag von Ludwig, 
> Christian [ludwigc@uni-mainz.de]
> Gesendet: Dienstag, 4. August 2009 11:14
> An: forum@abinit.org
> Betreff: [abinit-forum] p4_error: latest msg from perror: Bad file 
> descriptor
>
> I am running abinit 5.8.3 in parallel with mpich-1.2.6..13b on an IBM p590 
> machine with xlf95.
>
> For some iterations the programme ran without problems, but then I got this:
>
> Pulay update with  5 previous iterations:
>  mixing of old trial potential : alpha(m:m-4)=   .771       .727      -.646 
>       .205      -.124
>
>  ITER STEP NUMBER     7
>  vtorho : nnsclo_now=  1, note that nnsclo,dbl_nnsclo,istep=  0 0  7
> "getghc_cpp.f90", line 69: 1525-108 Error encountered while attempting to 
> allocate a data object.  The program will stop.
> rm_l_1_13856: (10241.737804) net_send: could not write to fd=6, errno = 9
> rm_l_1_13856:  p4_error: net_send write: -1
>    p4_error: latest msg from perror: Bad file descriptor
>
> p4_error looks like it has something to do with mpich. Can someone tell me 
> how to fix this?
>
>
>



-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Dr. Matthieu Verstraete

European Theoretical Spectroscopy Facility (ETSF)
Dpto. Fisica de Materiales,
U. del Pais Vasco,
Centro Joxe Mari Korta, Av. de Tolosa, 72,   Phone: +34-943018393
E-20018 Donostia-San Sebastian, Spain        Fax  : +34-943018390

Mail : matthieu.jean.verstraete@gmail.com
http://www-users.york.ac.uk/~mjv500