The ABINIT Users Mailing List ( CLOSED )

[Edouard Duriau <edouard.duriau@gmail.com>]

Hi all,

I have tried to do it differently and a new problem occured...
I replaced all of the archives in the ./abinit/tarballs folder with ones I downloaded from the website.

Unfortunately I got a new error message, different from the original one.
Then I just tried to install Abinit 5.8.4 thinking I might work. When building Abinit 5.8.4, I had the same problem which is this one:

Making all in wannier90
make[3]: Entering directory `/home/eduriau/WORK/Abinit/abinit-5.8.4/plugins/wannier90'
make -f ../../plugins/wannier90/wannier90.mk
make[4]: Entering directory `/home/eduriau/WORK/Abinit/abinit-5.8.4/plugins/wannier90'
gzip -cd /home/eduriau/.abinit/tarballs/wannier90-1.1.tar.gz | tar xf -
cd wannier90-1.1 && patch -p1 < /home/eduriau/WORK/Abinit/abinit-5.8.4/plugins/wannier90/wannier90-1.1-0001.patch
/bin/sh: patch: not found
make[4]: *** [uncompress-stamp] Error 127
make[4]: Leaving directory `/home/eduriau/WORK/Abinit/abinit-5.8.4/plugins/wannier90'
make[3]: *** [package-ready] Error 2
make[3]: Leaving directory `/home/eduriau/WORK/Abinit/abinit-5.8.4/plugins/wannier90'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/eduriau/WORK/Abinit/abinit-5.8.4/plugins'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/eduriau/WORK/Abinit/abinit-5.8.4'
make: *** [all] Error 2


For information, I disabled BigDFT when doing the configure step because I had the same error message (patch-related)

Do you have an idea of what is going on and how I can fix the problem?

Below is a copy of my last config.log
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by ABINIT configure 5.8.4, which was
generated by GNU Autoconf 2.62.  Invocation command line was

  $ ./configure --disable-bigdft

## --------- ##
## Platform. ##
## --------- ##

hostname = VaioEd-Linux
uname -m = i686
uname -r = 2.6.28-14-generic
uname -s = Linux
uname -v = #47-Ubuntu SMP Sat Jul 25 00:28:35 UTC 2009

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /home/eduriau/WORK/XCrysDen/XCrySDen-1.5.17-bin-semishared
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /home/eduriau/WORK/XCrysDen/XCrySDen-1.5.17-bin-semishared/scripts
PATH: /home/eduriau/WORK/XCrysDen/XCrySDen-1.5.17-bin-semishared/util


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2693: checking build system type
configure:2711: result: i686-pc-linux-gnu
configure:2733: checking host system type
configure:2748: result: i686-pc-linux-gnu
configure:2770: checking target system type
configure:2785: result: i686-pc-linux-gnu
configure:2829: checking for a BSD-compatible install
configure:2897: result: /usr/bin/install -c
configure:2908: checking whether build environment is sane
configure:2951: result: yes
configure:2976: checking for a thread-safe mkdir -p
configure:3015: result: /bin/mkdir -p
configure:3028: checking for gawk
configure:3058: result: no
configure:3028: checking for mawk
configure:3044: found /usr/bin/mawk
configure:3055: result: mawk
configure:3066: checking whether make sets $(MAKE)
configure:3088: result: yes
configure:3570: checking whether make sets $(MAKE)
configure:3592: result: yes
configure:3615: checking for a BSD-compatible install
configure:3683: result: /usr/bin/install -c
configure:3694: checking for a thread-safe mkdir -p
configure:3733: result: /bin/mkdir -p
configure:3736: checking whether ln -s works
configure:3740: result: yes
configure:3747: checking for a sed that does not truncate output
configure:3813: result: /bin/sed
configure:3822: checking for gawk
configure:3849: result: mawk
configure:3860: checking for grep that handles long lines and -e
configure:3920: result: /bin/grep
configure:3927: checking for egrep
configure:3991: result: /bin/grep -E
configure:6336: ABINIT version: 5.8.4
configure:6345: M4 010411 - Autoconf 026200 - Automake 011001 - Libtool 020204
configure:6355: reporting user interface changes:
configure:6358:  * new option --enable-macroave is available
configure:6361:  * new option --enable-gsl is available
configure:6364:  * new option --with-gsl-includes is available
configure:6367:  * new option --with-gsl-libs is available
configure:6370:  * new option --enable-exports is available
configure:6373:  * new option --with-ar-dbgflags is available
configure:6376:  * new option --with-cpp-dbgflags is available
configure:6379:  * new option --with-cc-dbgflags is available
configure:6382:  * new option --with-cc-ld-dbgflags is available
configure:6385:  * new option --with-cc-ld-dbglibs is available
configure:6388:  * new option --with-cxx-dbgflags is available
configure:6391:  * new option --with-cxx-ld-dbgflags is available
configure:6394:  * new option --with-cxx-ld-dbglibs is available
configure:6397:  * new option --with-fc-dbgflags is available
configure:6400:  * new option --with-fc-ld-dbgflags is available
configure:6403:  * new option --with-fc-ld-dbglibs is available
configure:6406:  * new option --enable-env-file is available
configure:6409:  * new option --enable-mpi-io-buggy is available
configure:6412:  * new option --enable-papi is available
configure:6415:  * new option --with-papi-includes is available
configure:6418:  * new option --with-papi-libs is available
configure:6421:  * --with-fc-vendor has a new meaning
configure:6423:    please check that with-fc-vendor="" is OK for you
configure:6426:  * new option --with-fc-version is available
configure:6429:  * --enable-etsf-xc renamed --enable-libxc
configure:6436:  * --with-etsf-xc-includes renamed --with-libxc-includes
configure:6443:  * --with-etsf-xc-libs renamed --with-libxc-libs
configure:6483: checking consistency of MPI options
configure:6518:  |---> all OK
configure:6521: 
configure:6530: checking consistency of external prerequisite options
configure:6564:  |---> all OK
configure:6567: 
configure:6576: checking consistency of plug-in options
configure:6589:  |---> all OK
configure:6592: 
configure:6610: parsing command-line options
configure:8066: checking for MPI support requested
configure:8068: result: no
configure:8451: checking for sh
configure:8469: found /bin/sh
configure:8482: result: /bin/sh
configure:8492: checking for perl
configure:8510: found /usr/bin/perl
configure:8523: result: /usr/bin/perl
configure:8533: checking for rm
configure:8551: found /bin/rm
configure:8564: result: /bin/rm
configure:8574: checking for mv
configure:8592: found /bin/mv
configure:8605: result: /bin/mv
configure:8615: checking for tar
configure:8633: found /bin/tar
configure:8646: result: /bin/tar
configure:8656: checking for latex
configure:8687: result: /bin/false
configure:8697: checking for dvips
configure:8728: result: /bin/false
configure:8738: checking for dvipdf
configure:8756: found /usr/bin/dvipdf
configure:8769: result: /usr/bin/dvipdf
configure:8779: checking for ps2pdf
configure:8797: found /usr/bin/ps2pdf
configure:8810: result: /usr/bin/ps2pdf
configure:8820: checking for markdown
configure:8853: result: no
configure:8860: checking for wget
configure:8878: found /usr/bin/wget
configure:8891: result: /usr/bin/wget
configure:8902: using internal version of MarkDown
configure:9101: checking for style of include used by make
configure:9129: result: GNU
configure:9199: checking for gcc
configure:9215: found /usr/bin/gcc
configure:9226: result: gcc
configure:9464: checking for C compiler version
configure:9472: gcc --version >&5
gcc (Ubuntu 4.3.3-5ubuntu4) 4.3.3
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:9476: $? = 0
configure:9483: gcc -v >&5
Using built-in specs.
Target: i486-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.3.3-5ubuntu4' --with-bugurl=file:///usr/share/doc/gcc-4.3/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.3 --program-suffix=-4.3 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-targets=all --with-tune=generic --enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu --target=i486-linux-gnu
Thread model: posix
gcc version 4.3.3 (Ubuntu 4.3.3-5ubuntu4) 
configure:9487: $? = 0
configure:9494: gcc -V >&5
gcc: '-V' option must have argument
configure:9498: $? = 1
configure:9521: checking for C compiler default output file name
configure:9543: gcc    conftest.c  >&5
configure:9547: $? = 0
configure:9585: result: a.out
configure:9602: checking whether the C compiler works
configure:9612: ./a.out
configure:9616: $? = 0
configure:9633: result: yes
configure:9640: checking whether we are cross compiling
configure:9642: result: no
configure:9645: checking for suffix of executables
configure:9652: gcc -o conftest    conftest.c  >&5
configure:9656: $? = 0
configure:9680: result: 
configure:9686: checking for suffix of object files
configure:9712: gcc -c   conftest.c >&5
configure:9716: $? = 0
configure:9739: result: o
configure:9743: checking whether we are using the GNU C compiler
configure:9772: gcc -c   conftest.c >&5
configure:9779: $? = 0
configure:9796: result: yes
configure:9805: checking whether gcc accepts -g
configure:9835: gcc -c -g  conftest.c >&5
configure:9842: $? = 0
configure:9943: result: yes
configure:9960: checking for gcc option to accept ISO C89
configure:10034: gcc  -c -g -O2  conftest.c >&5
configure:10041: $? = 0
configure:10064: result: none needed
configure:10084: checking dependency style of gcc
configure:10175: result: gcc3
configure:10195: checking how to run the C preprocessor
configure:10235: gcc -E  conftest.c
configure:10242: $? = 0
configure:10273: gcc -E  conftest.c
conftest.c:16:28: error: ac_nonexistent.h: No such file or directory
configure:10280: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "ABINIT"
| #define PACKAGE_TARNAME "abinit"
| #define PACKAGE_VERSION "5.8.4"
| #define PACKAGE_STRING "ABINIT 5.8.4"
| #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/"
| #define PACKAGE "abinit"
| #define VERSION "5.8.4"
| #define ABINIT_VERSION "5.8.4"
| #define ABINIT_VERSION_MAJOR "5"
| #define ABINIT_VERSION_MINOR "8"
| #define ABINIT_VERSION_MICRO "4"
| #define ABINIT_VERSION_BUILD "20090816"
| #define ABINIT_VERSION_BASE "5.8"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:10313: result: gcc -E
configure:10342: gcc -E  conftest.c
configure:10349: $? = 0
configure:10380: gcc -E  conftest.c
conftest.c:16:28: error: ac_nonexistent.h: No such file or directory
configure:10387: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "ABINIT"
| #define PACKAGE_TARNAME "abinit"
| #define PACKAGE_VERSION "5.8.4"
| #define PACKAGE_STRING "ABINIT 5.8.4"
| #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/"
| #define PACKAGE "abinit"
| #define VERSION "5.8.4"
| #define ABINIT_VERSION "5.8.4"
| #define ABINIT_VERSION_MAJOR "5"
| #define ABINIT_VERSION_MINOR "8"
| #define ABINIT_VERSION_MICRO "4"
| #define ABINIT_VERSION_BUILD "20090816"
| #define ABINIT_VERSION_BASE "5.8"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:10437: checking for the true C preprocessor
configure:10487: result: /lib/cpp
configure:10490: checking for C preprocessor options
configure:10503: result: -P -std=c89
configure:10758: checking for gcc
configure:10785: result: gcc
configure:11023: checking for C compiler version
configure:11031: gcc --version >&5
gcc (Ubuntu 4.3.3-5ubuntu4) 4.3.3
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:11035: $? = 0
configure:11042: gcc -v >&5
Using built-in specs.
Target: i486-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.3.3-5ubuntu4' --with-bugurl=file:///usr/share/doc/gcc-4.3/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.3 --program-suffix=-4.3 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-targets=all --with-tune=generic --enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu --target=i486-linux-gnu
Thread model: posix
gcc version 4.3.3 (Ubuntu 4.3.3-5ubuntu4) 
configure:11046: $? = 0
configure:11053: gcc -V >&5
gcc: '-V' option must have argument
configure:11057: $? = 1
configure:11060: checking whether we are using the GNU C compiler
configure:11113: result: yes
configure:11122: checking whether gcc accepts -g
configure:11260: result: yes
configure:11277: checking for gcc option to accept ISO C89
configure:11381: result: none needed
configure:11401: checking dependency style of gcc
configure:11492: result: gcc3
configure:11516: checking which type of compiler we have
configure:11717: result: gnu gcc
configure:11738: applying C compiler tricks (type: gnu, version: gcc)
configure:11799: checking for ANSI C header files
configure:11829: gcc -c   conftest.c >&5
configure:11836: $? = 0
configure:11935: gcc -o conftest    conftest.c  >&5
configure:11939: $? = 0
configure:11945: ./conftest
configure:11949: $? = 0
configure:11967: result: yes
configure:11991: checking for sys/types.h
configure:12012: gcc -c   conftest.c >&5
configure:12019: $? = 0
configure:12036: result: yes
configure:11991: checking for sys/stat.h
configure:12012: gcc -c   conftest.c >&5
configure:12019: $? = 0
configure:12036: result: yes
configure:11991: checking for stdlib.h
configure:12012: gcc -c   conftest.c >&5
configure:12019: $? = 0
configure:12036: result: yes
configure:11991: checking for string.h
configure:12012: gcc -c   conftest.c >&5
configure:12019: $? = 0
configure:12036: result: yes
configure:11991: checking for memory.h
configure:12012: gcc -c   conftest.c >&5
configure:12019: $? = 0
configure:12036: result: yes
configure:11991: checking for strings.h
configure:12012: gcc -c   conftest.c >&5
configure:12019: $? = 0
configure:12036: result: yes
configure:11991: checking for inttypes.h
configure:12012: gcc -c   conftest.c >&5
configure:12019: $? = 0
configure:12036: result: yes
configure:11991: checking for stdint.h
configure:12012: gcc -c   conftest.c >&5
configure:12019: $? = 0
configure:12036: result: yes
configure:11991: checking for unistd.h
configure:12012: gcc -c   conftest.c >&5
configure:12019: $? = 0
configure:12036: result: yes
configure:12050: checking whether byte ordering is bigendian
configure:12075: gcc -c   conftest.c >&5
conftest.c:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'is'
configure:12082: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "ABINIT"
| #define PACKAGE_TARNAME "abinit"
| #define PACKAGE_VERSION "5.8.4"
| #define PACKAGE_STRING "ABINIT 5.8.4"
| #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/"
| #define PACKAGE "abinit"
| #define VERSION "5.8.4"
| #define ABINIT_VERSION "5.8.4"
| #define ABINIT_VERSION_MAJOR "5"
| #define ABINIT_VERSION_MINOR "8"
| #define ABINIT_VERSION_MICRO "4"
| #define ABINIT_VERSION_BUILD "20090816"
| #define ABINIT_VERSION_BASE "5.8"
| #define GCC_CC 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #if ! (defined __BIG_ENDIAN__ || defined __LITTLE_ENDIAN__)
|            neither is defined;
|          #endif
|          typedef int dummy;
| 
configure:12126: gcc -c   conftest.c >&5
configure:12133: $? = 0
configure:12165: gcc -c   conftest.c >&5
conftest.c: In function 'main':
conftest.c:34: error: 'not' undeclared (first use in this function)
conftest.c:34: error: (Each undeclared identifier is reported only once
conftest.c:34: error: for each function it appears in.)
conftest.c:34: error: expected ';' before 'big'
configure:12172: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "ABINIT"
| #define PACKAGE_TARNAME "abinit"
| #define PACKAGE_VERSION "5.8.4"
| #define PACKAGE_STRING "ABINIT 5.8.4"
| #define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/"
| #define PACKAGE "abinit"
| #define VERSION "5.8.4"
| #define ABINIT_VERSION "5.8.4"
| #define ABINIT_VERSION_MAJOR "5"
| #define ABINIT_VERSION_MINOR "8"
| #define ABINIT_VERSION_MICRO "4"
| #define ABINIT_VERSION_BUILD "20090816"
| #define ABINIT_VERSION_BASE "5.8"
| #define GCC_CC 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #include <sys/types.h>
|         #include <sys/param.h>
| 
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
|          not big endian
|         #endif
| 
|   ;
|   return 0;
| }
configure:12424: result: no
configure:12685: checking for g++
configure:12701: found /usr/bin/g++
configure:12712: result: g++
configure:12743: checking for C++ compiler version
configure:12751: g++ --version >&5
g++ (Ubuntu 4.3.3-5ubuntu4) 4.3.3
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12755: $? = 0
configure:12762: g++ -v >&5
Using built-in specs.
Target: i486-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.3.3-5ubuntu4' --with-bugurl=file:///usr/share/doc/gcc-4.3/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.3 --program-suffix=-4.3 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-targets=all --with-tune=generic --enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu --target=i486-linux-gnu
Thread model: posix
gcc version 4.3.3 (Ubuntu 4.3.3-5ubuntu4) 
configure:12766: $? = 0
configure:12773: g++ -V >&5
g++: '-V' option must have argument
configure:12777: $? = 1
configure:12780: checking whether we are using the GNU C++ compiler
configure:12809: g++ -c   conftest.cpp >&5
configure:12816: $? = 0
configure:12833: result: yes
configure:12842: checking whether g++ accepts -g
configure:12872: g++ -c -g  conftest.cpp >&5
configure:12879: $? = 0
configure:12980: result: yes
configure:13005: checking dependency style of g++
configure:13096: result: gcc3
configure:13119: checking which type of C++ compiler we have
configure:13317: result: gnu g++
configure:13337: applying C++ compiler tricks (type: gnu, version: g++)
configure:13633: checking for gfortran
configure:13649: found /usr/bin/gfortran
configure:13660: result: gfortran
configure:13690: checking for Fortran compiler version
configure:13698: gfortran --version >&5
GNU Fortran (Ubuntu 4.3.3-5ubuntu4) 4.3.3
Copyright (C) 2008 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:13702: $? = 0
configure:13709: gfortran -v >&5
Using built-in specs.
Target: i486-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.3.3-5ubuntu4' --with-bugurl=file:///usr/share/doc/gcc-4.3/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.3 --program-suffix=-4.3 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-targets=all --with-tune=generic --enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu --target=i486-linux-gnu
Thread model: posix
gcc version 4.3.3 (Ubuntu 4.3.3-5ubuntu4) 
configure:13713: $? = 0
configure:13720: gfortran -V >&5
gfortran: '-V' option must have argument
configure:13724: $? = 1
configure:13732: checking whether we are using the GNU Fortran compiler
configure:13751: gfortran -c   conftest.F >&5
configure:13758: $? = 0
configure:13775: result: yes
configure:13781: checking whether gfortran accepts -g
configure:13798: gfortran -c -g  conftest.f >&5
configure:13805: $? = 0
configure:13821: result: yes
configure:13862: checking which type of Fortran compiler we have
configure:14211: result: gnu 4.3
configure:14220: checking whether the Fortran compiler accepts exit()
configure:14241: gfortran -o conftest    conftest.f  >&5
configure:14248: $? = 0
configure:14282: result: yes
configure:14287: checking whether the Fortran compiler accepts flush()
configure:14308: gfortran -o conftest    conftest.f  >&5
configure:14315: $? = 0
configure:14349: result: yes
configure:14354: checking whether the Fortran compiler accepts gamma()
configure:14376: gfortran -o conftest    conftest.f  >&5
configure:14383: $? = 0
configure:14417: result: yes
configure:14433: applying Fortran compiler tricks (type: gnu, version: 4.3)
configure:14592: checking whether to use C clock for timings
configure:14609: result: no
configure:15498: checking for python
configure:15514: found /usr/bin/python
configure:15525: result: python
configure:15540: checking for python-config
configure:15570: result: no
configure:15540: checking for python2.6-config
configure:15570: result: no
configure:15540: checking for python2.5-config
configure:15570: result: no
configure:15540: checking for python2.4-config
configure:15570: result: no
configure:15588: checking for Python CPPFLAGS
configure:15593: result: 
configure:15602: checking for bzr
configure:15632: result: no
configure:15875: checking for ar
configure:15893: found /usr/bin/ar
configure:15905: result: /usr/bin/ar
configure:15958: checking for ranlib
configure:15974: found /usr/bin/ranlib
configure:15985: result: ranlib
configure:16099: this section is still under development
configure:16101: checking for a 64-bit architecture
configure:16103: result: unknown
configure:16166: checking for optimization level
configure:16168: result: standard
configure:16191: loading optimizations for cc: gnu/all/all
configure:16249: loading optimizations for cxx: gnu/all/all
configure:16307: loading optimizations for fc: gnu/all/all
configure:16391: setting C debug flags to '-g'
configure:16398: setting C++ debug flags to '-g'
configure:16405: setting Fortran debug flags to '-g'
configure:18081: checking whether MPI is usable
configure:18083: result: no
configure:18085: checking whether to build parallel code
configure:18087: result: no
configure:18242: checking whether to use the FFTW library
configure:18244: result: no
configure:18270: checking whether to use the GNU Scientific Library
configure:18272: result: no
configure:18330: applying linear algebra tricks (type: abinit)
configure:18366: checking whether to build the LINALG library
configure:18368: result: yes
configure:18395: checking whether to activate ScaLAPACK support
configure:18397: result: no
configure:18426: checking whether to use the PAPI library
configure:18428: result: no
configure:18474: using tarball repository /home/eduriau/.abinit/tarballs
configure:18674: checking whether to enable the FOX plug-in
configure:18676: result: no
configure:18678: checking whether to build the FOX plug-in
configure:18680: result: no
configure:18798: checking for a source tarball of NETCDF
configure:18803: result: yes
configure:18870: applying NetCDF tricks (vendor: gnu, version: 4.3)
configure:18922: checking whether to enable the NETCDF plug-in
configure:18924: result: yes
configure:18926: checking whether to build the NETCDF plug-in
configure:18928: result: yes
configure:19053: checking for a source tarball of ETSF_IO
configure:19058: result: yes
configure:19115: applying ETSF_IO tricks (vendor: gnu, version: 4.3)
configure:19132: checking whether to enable the ETSF_IO plug-in
configure:19134: result: yes
configure:19136: checking whether to build the ETSF_IO plug-in
configure:19138: result: yes
configure:19247: checking for a source tarball of LIBXC
configure:19252: result: yes
configure:19302: applying LIBXC tricks (not needed yet)
configure:19310: checking whether to enable the LIBXC plug-in
configure:19312: result: yes
configure:19314: checking whether to build the LIBXC plug-in
configure:19316: result: yes
configure:19503: checking whether to enable the BIGDFT plug-in
configure:19505: result: no
configure:19507: checking whether to build the BIGDFT plug-in
configure:19509: result: no
configure:19682: checking whether to enable the XMLF90 plug-in
configure:19684: result: no
configure:19686: checking whether to build the XMLF90 plug-in
configure:19688: result: no
configure:19800: checking for a source tarball of WANNIER90
configure:19805: result: yes
configure:19872: applying Wannier90 tricks (vendor: gnu, version: 4.3)
configure:19896: checking whether to enable the WANNIER90 plug-in
configure:19898: result: yes
configure:19900: checking whether to build the WANNIER90 plug-in
configure:19902: result: yes
configure:19959: checking whether to build Nightly code
configure:19961: result: no
configure:20508: checking whether to enable bindings
configure:20517: result: no
configure:20529: checking whether to enable error handlers
configure:20538: result: no
configure:20557: checking whether to build exports
configure:20559: result: no
configure:20571: checking whether to enable GW double-precision calculations
configure:20580: result: no
configure:20592: checking whether to use macroave
configure:20601: result: yes
configure:20956: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by ABINIT config.status 5.8.4, which was
generated by GNU Autoconf 2.62.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on VaioEd-Linux

config.status:1379: creating config.mk
config.status:1379: creating config.py
config.status:1379: creating config.sh
config.status:1379: creating config.dump
config.status:1379: creating config/wrappers/wrap-fc
config.status:1379: creating plugins/xmlf90/build.mk
config.status:1379: creating src/16_hideleave/m_build_info.F90
config.status:1379: creating tests/tests.env
config.status:1379: creating Makefile
config.status:1379: creating src/Makefile
config.status:1379: creating src/10_defs/Makefile
config.status:1379: creating src/interfaces/Makefile
config.status:1379: creating src/01_gsl_ext/Makefile
config.status:1379: creating src/01_macroavnew_ext/Makefile
config.status:1379: creating src/12_hide_mpi/Makefile
config.status:1379: creating src/14_hidewrite/Makefile
config.status:1379: creating src/16_hideleave/Makefile
config.status:1379: creating src/18_timing/Makefile
config.status:1379: creating src/27_toolbox_oop/Makefile
config.status:1379: creating src/28_numeric_noabirule/Makefile
config.status:1379: creating src/32_util/Makefile
config.status:1379: creating src/32_contract/Makefile
config.status:1379: creating src/42_parser/Makefile
config.status:1379: creating src/42_geometry/Makefile
config.status:1379: creating src/42_nlstrain/Makefile
config.status:1379: creating src/47_xml/Makefile
config.status:1379: creating src/47_papi_counters/Makefile
config.status:1379: creating src/50_abitypes_defs/Makefile
config.status:1379: creating src/51_manage_mpi/Makefile
config.status:1379: creating src/52_fft_mpi_noabirule/Makefile
config.status:1379: creating src/53_abiutil/Makefile
config.status:1379: creating src/53_spacepar/Makefile
config.status:1379: creating src/53_ffts/Makefile
config.status:1379: creating src/56_xc/Makefile
config.status:1379: creating src/56_recipspace/Makefile
config.status:1379: creating src/57_iovars/Makefile
config.status:1379: creating src/59_io_mpi/Makefile
config.status:1379: creating src/61_ionetcdf/Makefile
config.status:1379: creating src/62_cg_noabirule/Makefile
config.status:1379: creating src/62_poisson/Makefile
config.status:1379: creating src/62_wvl_wfs/Makefile
config.status:1379: creating src/62_iowfdenpot/Makefile
config.status:1379: creating src/62_bader/Makefile
config.status:1379: creating src/62_occeig/Makefile
config.status:1379: creating src/65_nonlocal/Makefile
config.status:1379: creating src/65_psp/Makefile
config.status:1379: creating src/66_wfs/Makefile
config.status:1379: creating src/66_paw/Makefile
config.status:1379: creating src/67_recursion/Makefile
config.status:1379: creating src/67_common/Makefile
config.status:1379: creating src/68_rsprc/Makefile
config.status:1379: creating src/68_gw/Makefile
config.status:1379: creating src/72_response/Makefile
config.status:1379: creating src/72_geomoptim/Makefile
config.status:1379: creating src/77_suscep/Makefile
config.status:1379: creating src/77_lwf/Makefile
config.status:1379: creating src/77_ddb/Makefile
config.status:1379: creating src/79_seqpar_mpi/Makefile
config.status:1379: creating src/83_cut3d/Makefile
config.status:1379: creating src/93_rdm/Makefile
config.status:1379: creating src/95_drive/Makefile
config.status:1379: creating src/98_main/Makefile
config.status:1379: creating src/libs/Makefile
config.status:1379: creating src/nightly/Makefile
config.status:1379: creating prereqs/Makefile
config.status:1379: creating prereqs/linalg/Makefile
config.status:1379: creating plugins/Makefile
config.status:1379: creating plugins/fox/Makefile
config.status:1379: creating plugins/netcdf/Makefile
config.status:1379: creating plugins/etsf_io/Makefile
config.status:1379: creating plugins/libxc/Makefile
config.status:1379: creating plugins/bigdft/Makefile
config.status:1379: creating plugins/wannier90/Makefile
config.status:1379: creating plugins/xmlf90/Makefile
config.status:1379: creating bindings/Makefile
config.status:1379: creating bindings/parser/Makefile
config.status:1379: creating doc/Makefile
config.status:1379: creating tests/Makefile
config.status:1379: creating config.h
config.status:1653: executing depfiles commands
config.status:1653: executing script-perms commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=i686-pc-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=i686-pc-linux-gnu
ac_cv_objext=o
ac_cv_path_AR=/usr/bin/ar
ac_cv_path_BOURNE_SHELL=/bin/sh
ac_cv_path_DVI2PDF=/usr/bin/dvipdf
ac_cv_path_DVI2PS=/bin/false
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_GREP=/bin/grep
ac_cv_path_LATEX=/bin/false
ac_cv_path_MV=/bin/mv
ac_cv_path_PERL=/usr/bin/perl
ac_cv_path_PS2PDF=/usr/bin/ps2pdf
ac_cv_path_RM=/bin/rm
ac_cv_path_SED=/bin/sed
ac_cv_path_TAR=/bin/tar
ac_cv_path_WGET=/usr/bin/wget
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=mawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_PYTHON=python
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_target=i686-pc-linux-gnu
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3

## ----------------- ##
## Output variables. ##
## ----------------- ##

ABINIT_BINARY_PACKAGE='abinit-5.8.4_i686_linux_gnu4.3'
ABINIT_TARGET='i686_linux_gnu4.3'
ABINIT_VERSION='5.8.4'
ABINIT_VERSION_BASE='5.8'
ABINIT_VERSION_BUILD='20090816'
ABINIT_VERSION_MAJOR='5'
ABINIT_VERSION_MICRO='4'
ABINIT_VERSION_MINOR='8'
ACLOCAL='${SHELL} /home/eduriau/WORK/Abinit/abinit-5.8.4/config/gnu/missing --run aclocal-1.10'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/eduriau/WORK/Abinit/abinit-5.8.4/config/gnu/missing --run tar'
AR='ar'
ARFLAGS='    rc'
ARFLAGS_64BITS=''
ARFLAGS_CMD='rc'
ARFLAGS_DEBUG=''
ARFLAGS_EXTRA=''
ARFLAGS_OPT=''
AUTOCONF='${SHELL} /home/eduriau/WORK/Abinit/abinit-5.8.4/config/gnu/missing --run autoconf'
AUTOHEADER='${SHELL} /home/eduriau/WORK/Abinit/abinit-5.8.4/config/gnu/missing --run autoheader'
AUTOMAKE='${SHELL} /home/eduriau/WORK/Abinit/abinit-5.8.4/config/gnu/missing --run automake-1.10'
AWK='mawk'
BAZAAR=''
BOURNE_SHELL='/bin/sh'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CC_LDFLAGS='   '
CC_LDFLAGS_64BITS=''
CC_LDFLAGS_DEBUG=''
CC_LDFLAGS_EXTRA=''
CC_LDFLAGS_OPT=''
CC_LIBS='   '
CC_LIBS_64BITS=''
CC_LIBS_DEBUG=''
CC_LIBS_EXTRA=''
CC_LIBS_OPT=''
CFGFLAGS_BIGDFT=''
CFGFLAGS_ETSF_IO=''
CFGFLAGS_FOX=''
CFGFLAGS_LIBXC=''
CFGFLAGS_NETCDF=' --disable-cxx'
CFGFLAGS_WANNIER90=''
CFGFLAGS_XMLF90=''
CFLAGS=' -g -O2 '
CFLAGS_64BITS=''
CFLAGS_BIGDFT=' -g -O2 '
CFLAGS_DEBUG='-g'
CFLAGS_ETSF_IO=' -g -O2 '
CFLAGS_EXTRA=''
CFLAGS_FOX=' -g -O2 '
CFLAGS_LIBXC=' -g -O2 '
CFLAGS_LINALG=' -g -O2 '
CFLAGS_NETCDF=' -g -O2 '
CFLAGS_OPT='-O2'
CFLAGS_WANNIER90=' -g -O2 '
CFLAGS_XMLF90=' -g -O2 '
CPP='gcc -E'
CPPFLAGS='   '
CPPFLAGS_64BITS=''
CPPFLAGS_BIGDFT=''
CPPFLAGS_DEBUG=''
CPPFLAGS_ETSF_IO=''
CPPFLAGS_EXTRA=''
CPPFLAGS_FOX=''
CPPFLAGS_LIBXC=''
CPPFLAGS_LINALG='   '
CPPFLAGS_NETCDF=' -DNDEBUG -DpgiFortran'
CPPFLAGS_OPT=''
CPPFLAGS_WANNIER90=''
CPPFLAGS_XMLF90=''
CXX='g++'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS=' -g -O2 '
CXXFLAGS_64BITS=''
CXXFLAGS_BIGDFT=' -g -O2 '
CXXFLAGS_DEBUG='-g'
CXXFLAGS_ETSF_IO=' -g -O2 '
CXXFLAGS_EXTRA=''
CXXFLAGS_FOX=' -g -O2 '
CXXFLAGS_LIBXC=' -g -O2 '
CXXFLAGS_LINALG=' -g -O2 '
CXXFLAGS_NETCDF=' -g -O2 '
CXXFLAGS_OPT='-O2'
CXXFLAGS_WANNIER90=' -g -O2 '
CXXFLAGS_XMLF90=' -g -O2 '
CXX_LDFLAGS='   '
CXX_LDFLAGS_64BITS=''
CXX_LDFLAGS_DEBUG=''
CXX_LDFLAGS_EXTRA=''
CXX_LDFLAGS_OPT=''
CXX_LIBS='   '
CXX_LIBS_64BITS=''
CXX_LIBS_DEBUG=''
CXX_LIBS_EXTRA=''
CXX_LIBS_OPT=''
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DO_BUILD_01_GSL_EXT_FALSE=''
DO_BUILD_01_GSL_EXT_TRUE='#'
DO_BUILD_01_MACROAVNEW_EXT_FALSE='#'
DO_BUILD_01_MACROAVNEW_EXT_TRUE=''
DO_BUILD_BIGDFT_FALSE=''
DO_BUILD_BIGDFT_TRUE='#'
DO_BUILD_BINDINGS_FALSE=''
DO_BUILD_BINDINGS_TRUE='#'
DO_BUILD_CCLOCK_FALSE=''
DO_BUILD_CCLOCK_TRUE='#'
DO_BUILD_ERROR_HANDLERS_FALSE=''
DO_BUILD_ERROR_HANDLERS_TRUE='#'
DO_BUILD_ETSF_IO_FALSE='#'
DO_BUILD_ETSF_IO_TRUE=''
DO_BUILD_EXPORTS_FALSE=''
DO_BUILD_EXPORTS_TRUE='#'
DO_BUILD_FOX_FALSE=''
DO_BUILD_FOX_TRUE='#'
DO_BUILD_LIBXC_FALSE='#'
DO_BUILD_LIBXC_TRUE=''
DO_BUILD_LINALG_FALSE='#'
DO_BUILD_LINALG_TRUE=''
DO_BUILD_MACROAVE_FALSE='#'
DO_BUILD_MACROAVE_TRUE=''
DO_BUILD_NETCDF_FALSE='#'
DO_BUILD_NETCDF_TRUE=''
DO_BUILD_NIGHTLY_FALSE=''
DO_BUILD_NIGHTLY_TRUE='#'
DO_BUILD_PARALLEL_FALSE=''
DO_BUILD_PARALLEL_TRUE='#'
DO_BUILD_WANNIER90_FALSE='#'
DO_BUILD_WANNIER90_TRUE=''
DO_BUILD_XMLF90_FALSE=''
DO_BUILD_XMLF90_TRUE='#'
DO_ENABLE_BIGDFT_FALSE=''
DO_ENABLE_BIGDFT_TRUE='#'
DO_ENABLE_ETSF_IO_FALSE='#'
DO_ENABLE_ETSF_IO_TRUE=''
DO_ENABLE_FOX_FALSE=''
DO_ENABLE_FOX_TRUE='#'
DO_ENABLE_LIBXC_FALSE='#'
DO_ENABLE_LIBXC_TRUE=''
DO_ENABLE_NETCDF_FALSE='#'
DO_ENABLE_NETCDF_TRUE=''
DO_ENABLE_WANNIER90_FALSE='#'
DO_ENABLE_WANNIER90_TRUE=''
DO_ENABLE_XMLF90_FALSE=''
DO_ENABLE_XMLF90_TRUE='#'
DO_TEST_GWDP_FALSE=''
DO_TEST_GWDP_TRUE='#'
DVI2PDF='/usr/bin/dvipdf'
DVI2PS='/bin/false'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
F77='gfortran'
FC='gfortran'
FCFLAGS=' -g  -ffree-line-length-none'
FCFLAGS_64BITS=''
FCFLAGS_BIGDFT=' -g  -ffree-line-length-none -O2'
FCFLAGS_DEBUG='-g'
FCFLAGS_ETSF_IO=' -g  -ffree-line-length-none -O2'
FCFLAGS_EXTRA=' -ffree-line-length-none'
FCFLAGS_FIXEDFORM=''
FCFLAGS_FOX=' -g  -ffree-line-length-none -O2'
FCFLAGS_FREEFORM=''
FCFLAGS_LIBXC=' -g  -ffree-line-length-none -O2'
FCFLAGS_LINALG=' -g  -ffree-line-length-none -O2'
FCFLAGS_NETCDF=' -g  -ffree-line-length-none -O2'
FCFLAGS_OPT='-O2'
FCFLAGS_WANNIER90=' -g  -ffree-line-length-none -O2'
FCFLAGS_XMLF90=' -g  -ffree-line-length-none -O2'
FCLIBS=''
FCLIBS_ETSF_IO='$(FCLIBS)'
FCLIBS_FOX=''
FCLIBS_NETCDF='$(FCLIBS)'
FCLIBS_WANNIER90='$(FCLIBS)'
FC_LDFLAGS='   '
FC_LDFLAGS_64BITS=''
FC_LDFLAGS_DEBUG=''
FC_LDFLAGS_EXTRA=''
FC_LDFLAGS_OPT=''
FC_LIBS='   '
FC_LIBS_64BITS=''
FC_LIBS_DEBUG=''
FC_LIBS_EXTRA=''
FC_LIBS_OPT=''
FC_NOWRAP='gfortran'
FFLAGS=' -g  -ffree-line-length-none'
GREP='/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LATEX='/bin/false'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LN_S='ln -s'
LTLIBOBJS=''
LTXFLAGS=''
MAKEINFO='${SHELL} /home/eduriau/WORK/Abinit/abinit-5.8.4/config/gnu/missing --run makeinfo'
MARKDOWN='/usr/bin/perl /home/eduriau/WORK/Abinit/abinit-5.8.4/util/developers/markdown.pl'
MDFLAGS=''
MKDIR_P='/bin/mkdir -p'
MODEXT='mod'
MPI_CC_LDFLAGS=''
MPI_CC_LIBS=''
MPI_CFLAGS=''
MPI_CPPFLAGS=''
MPI_CXXFLAGS=''
MPI_CXX_LDFLAGS=''
MPI_CXX_LIBS=''
MPI_FCFLAGS=''
MPI_FC_LDFLAGS=''
MPI_FC_LIBS=''
MPI_RUNNER=''
MV='/bin/mv'
OBJEXT='o'
PACKAGE='abinit'
PACKAGE_BUGREPORT='https://bugs.launchpad.net/abinit/'
PACKAGE_NAME='ABINIT'
PACKAGE_STRING='ABINIT 5.8.4'
PACKAGE_TARNAME='abinit'
PACKAGE_VERSION='5.8.4'
PATH_SEPARATOR=':'
PDFFLAGS=''
PERL='/usr/bin/perl'
PS2PDF='/usr/bin/ps2pdf'
PYTHON='python'
PYTHON_CONFIG=''
PYTHON_CPPFLAGS=''
RANLIB='ranlib'
RM='/bin/rm'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP=''
TAR='/bin/tar'
TRUE_CPP='/lib/cpp'
TRUE_CPPFLAGS='-P -std=c89'
VERSION='5.8.4'
WGET='/usr/bin/wget'
abi_ac_version='026200'
abi_am_version='011001'
abi_cc_vendor='gnu'
abi_cc_version='gcc'
abi_cpu_64bits='unknown'
abi_cpu_bits='32'
abi_cpu_model='unknown'
abi_cpu_vendor='unknown'
abi_cxx_vendor='gnu'
abi_cxx_version='g++'
abi_fc_vendor='gnu'
abi_fc_version='4.3'
abi_fc_wrap='no'
abi_lt_version='020204'
abi_m4_version='010411'
abinit_bindir='/opt/etsf/abinit/5.8/bin'
abinit_builddir='/home/eduriau/WORK/Abinit/abinit-5.8.4'
abinit_chkdir='/opt/etsf/abinit/5.8/tests'
abinit_datdir='/opt/etsf/abinit'
abinit_docdir='/opt/etsf/abinit/5.8/doc'
abinit_incdir='/opt/etsf/abinit/5.8/include'
abinit_libdir='/opt/etsf/abinit/5.8/lib'
abinit_mandir='/opt/etsf/abinit/man'
abinit_prefix='/opt/etsf'
abinit_rundir='/opt/etsf/abinit/bin'
abinit_srcdir='/home/eduriau/WORK/Abinit/abinit-5.8.4'
abinit_tardir='/home/eduriau/.abinit/tarballs'
abinit_wwwdir='/opt/etsf/abinit/5.8/www'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_FC='gfortran'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bigdft_pkg_name='bigdft-1.2.0.2'
bigdft_pkg_string='BigDFT library 1.2.0.2 (upstream release)'
bindir='${exec_prefix}/bin'
build='i686-pc-linux-gnu'
build_alias=''
build_bigdft='no'
build_cpu='i686'
build_etsf_io='yes'
build_fox='no'
build_libxc='yes'
build_linalg='yes'
build_netcdf='yes'
build_os='linux-gnu'
build_vendor='pc'
build_wannier90='yes'
build_xmlf90='no'
bzr_branch=''
bzr_clean=''
bzr_revno=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_64bit_flags='no'
enable_all_plugins=''
enable_bigdft='no'
enable_bindings='no'
enable_cclock='no'
enable_config_file='yes'
enable_debug='symbols'
enable_env_file='yes'
enable_error_handlers='no'
enable_etsf_io='yes'
enable_exports='no'
enable_fc_wrapper='no'
enable_fftw='no'
enable_fftw_threads='no'
enable_fox='no'
enable_gsl='no'
enable_gw_dpc='no'
enable_libxc='yes'
enable_macroave='yes'
enable_mpi='no'
enable_mpi_io='no'
enable_mpi_io_buggy='no'
enable_mpi_trace='no'
enable_netcdf='yes'
enable_nightly='no'
enable_optlevel='standard'
enable_papi='no'
enable_scalapack='no'
enable_shared=''
enable_static=''
enable_stdin='yes'
enable_tricks='yes'
enable_wannier90='yes'
enable_xmlf90='no'
etsf_io_pkg_name='etsf_io-1.0.2'
etsf_io_pkg_string='ETSF I/O library 1.0.2 (upstream release)'
exec_prefix='${prefix}'
fcflags_opt_01_gsl_ext='-O2'
fcflags_opt_01_macroavnew_ext='-O2'
fcflags_opt_10_defs='-O2'
fcflags_opt_12_hide_mpi='-O2'
fcflags_opt_14_hidewrite='-O2'
fcflags_opt_16_hideleave='-O2'
fcflags_opt_18_timing='-O2'
fcflags_opt_27_toolbox_oop='-O2'
fcflags_opt_28_numeric_noabirule='-O2'
fcflags_opt_32_contract='-O2'
fcflags_opt_32_util='-O2'
fcflags_opt_42_geometry='-O2'
fcflags_opt_42_nlstrain='-O2'
fcflags_opt_42_parser='-O2'
fcflags_opt_47_papi_counters='-O2'
fcflags_opt_47_xml='-O2'
fcflags_opt_50_abitypes_defs='-O2'
fcflags_opt_51_manage_mpi='-O2'
fcflags_opt_52_fft_mpi_noabirule='-O2'
fcflags_opt_53_abiutil='-O2'
fcflags_opt_53_ffts='-O2'
fcflags_opt_53_spacepar='-O2'
fcflags_opt_56_recipspace='-O2'
fcflags_opt_56_xc='-O2'
fcflags_opt_57_iovars='-O2'
fcflags_opt_59_io_mpi='-O2'
fcflags_opt_61_ionetcdf='-O2'
fcflags_opt_62_bader='-O2'
fcflags_opt_62_cg_noabirule='-O2'
fcflags_opt_62_iowfdenpot='-O2'
fcflags_opt_62_occeig='-O2'
fcflags_opt_62_poisson='-O2'
fcflags_opt_62_wvl_wfs='-O2'
fcflags_opt_65_nonlocal='-O2'
fcflags_opt_65_psp='-O2'
fcflags_opt_66_paw='-O2'
fcflags_opt_66_wfs='-O2'
fcflags_opt_67_common='-O2'
fcflags_opt_67_recursion='-O2'
fcflags_opt_68_gw='-O2'
fcflags_opt_68_rsprc='-O2'
fcflags_opt_72_geomoptim='-O2'
fcflags_opt_72_response='-O2'
fcflags_opt_77_ddb='-O2'
fcflags_opt_77_lwf='-O2'
fcflags_opt_77_suscep='-O2'
fcflags_opt_79_seqpar_mpi='-O2'
fcflags_opt_83_cut3d='-O2'
fcflags_opt_93_rdm='-O2'
fcflags_opt_95_drive='-O2'
fcflags_opt_98_main='-O2'
fcflags_opt_bigdft='-O2'
fcflags_opt_etsf_io='-O2'
fcflags_opt_fox='-O2'
fcflags_opt_interfaces='-O2'
fcflags_opt_libxc='-O2'
fcflags_opt_linalg='-O2'
fcflags_opt_netcdf='-O2'
fcflags_opt_wannier90='-O2'
fcflags_opt_xmlf90='-O2'
fox_pkg_name='FoX-4.0.3'
fox_pkg_string='FoX Fortran XML library 4.0.3 (upstream release)'
host='i686-pc-linux-gnu'
host_alias=''
host_cpu='i686'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='$(SHELL) /home/eduriau/WORK/Abinit/abinit-5.8.4/config/gnu/install-sh'
lib_bigdft_includes=''
lib_bigdft_libs=''
lib_etsf_io_includes='-I$(abinit_builddir)/plugins/etsf_io'
lib_etsf_io_libs='-L$(abinit_builddir)/plugins/etsf_io -letsf_io_low_level -letsf_io_utils -letsf_io'
lib_fft_includes=''
lib_fft_libs=''
lib_fox_includes=''
lib_fox_libs=''
lib_gsl_includes=''
lib_gsl_libs=''
lib_libxc_includes='-I$(abinit_builddir)/plugins/libxc'
lib_libxc_libs='-L$(abinit_builddir)/plugins/libxc -lxc'
lib_linalg_includes=''
lib_linalg_libs='-L$(abinit_builddir)/prereqs/linalg -llapack -lblas'
lib_netcdf_includes='-I$(abinit_builddir)/plugins/netcdf'
lib_netcdf_libs='-L$(abinit_builddir)/plugins/netcdf -lnetcdf'
lib_papi_includes=''
lib_papi_libs=''
lib_wannier90_includes=''
lib_wannier90_libs='-L$(abinit_builddir)/plugins/wannier90 -lwannier'
lib_xmlf90_includes=''
lib_xmlf90_libs=''
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
libxc_pkg_name='libxc-svn-fixed-20090607'
libxc_pkg_string='LibXC library SVN 20090607 (fixed for Abinit)'
linalg_pkg_name='lapack-abinit_5.7'
linalg_pkg_string='An old, robust, version of the Lapack library (hacked by Yann Pouillon)'
linalg_supported_types='abinit acml asl atlas cxml essl external mkl mlib sgimath sunperf'
linalg_tricks_bypass='no'
linalg_type='abinit'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
mpi_level='1'
mpi_native_runner=''
mpi_type='unknown'
mpi_usable='no'
netcdf_pkg_name='netcdf-3.6.3'
netcdf_pkg_string='NetCDF library 3.6.3 (upstream release)'
nightly_timeout=''
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/opt/etsf'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
src_01_gsl_ext_includes='-I$(top_builddir)/src/01_gsl_ext -I$(top_srcdir)/src/01_gsl_ext'
src_01_macroavnew_ext_includes='-I$(top_builddir)/src/01_macroavnew_ext -I$(top_srcdir)/src/01_macroavnew_ext'
src_10_defs_includes='-I$(top_builddir)/src/10_defs -I$(top_srcdir)/src/10_defs'
src_12_hide_mpi_includes='-I$(top_builddir)/src/12_hide_mpi -I$(top_srcdir)/src/12_hide_mpi'
src_14_hidewrite_includes='-I$(top_builddir)/src/14_hidewrite -I$(top_srcdir)/src/14_hidewrite'
src_16_hideleave_includes='-I$(top_builddir)/src/16_hideleave -I$(top_srcdir)/src/16_hideleave'
src_18_timing_includes='-I$(top_builddir)/src/18_timing -I$(top_srcdir)/src/18_timing'
src_27_toolbox_oop_includes='-I$(top_builddir)/src/27_toolbox_oop -I$(top_srcdir)/src/27_toolbox_oop'
src_28_numeric_noabirule_includes='-I$(top_builddir)/src/28_numeric_noabirule -I$(top_srcdir)/src/28_numeric_noabirule'
src_32_contract_includes='-I$(top_builddir)/src/32_contract -I$(top_srcdir)/src/32_contract'
src_32_util_includes='-I$(top_builddir)/src/32_util -I$(top_srcdir)/src/32_util'
src_42_geometry_includes='-I$(top_builddir)/src/42_geometry -I$(top_srcdir)/src/42_geometry'
src_42_nlstrain_includes='-I$(top_builddir)/src/42_nlstrain -I$(top_srcdir)/src/42_nlstrain'
src_42_parser_includes='-I$(top_builddir)/src/42_parser -I$(top_srcdir)/src/42_parser'
src_47_papi_counters_includes='-I$(top_builddir)/src/47_papi_counters -I$(top_srcdir)/src/47_papi_counters'
src_47_xml_includes='-I$(top_builddir)/src/47_xml -I$(top_srcdir)/src/47_xml'
src_50_abitypes_defs_includes='-I$(top_builddir)/src/50_abitypes_defs -I$(top_srcdir)/src/50_abitypes_defs'
src_51_manage_mpi_includes='-I$(top_builddir)/src/51_manage_mpi -I$(top_srcdir)/src/51_manage_mpi'
src_52_fft_mpi_noabirule_includes='-I$(top_builddir)/src/52_fft_mpi_noabirule -I$(top_srcdir)/src/52_fft_mpi_noabirule'
src_53_abiutil_includes='-I$(top_builddir)/src/53_abiutil -I$(top_srcdir)/src/53_abiutil'
src_53_ffts_includes='-I$(top_builddir)/src/53_ffts -I$(top_srcdir)/src/53_ffts'
src_53_spacepar_includes='-I$(top_builddir)/src/53_spacepar -I$(top_srcdir)/src/53_spacepar'
src_56_recipspace_includes='-I$(top_builddir)/src/56_recipspace -I$(top_srcdir)/src/56_recipspace'
src_56_xc_includes='-I$(top_builddir)/src/56_xc -I$(top_srcdir)/src/56_xc'
src_57_iovars_includes='-I$(top_builddir)/src/57_iovars -I$(top_srcdir)/src/57_iovars'
src_59_io_mpi_includes='-I$(top_builddir)/src/59_io_mpi -I$(top_srcdir)/src/59_io_mpi'
src_61_ionetcdf_includes='-I$(top_builddir)/src/61_ionetcdf -I$(top_srcdir)/src/61_ionetcdf'
src_62_bader_includes='-I$(top_builddir)/src/62_bader -I$(top_srcdir)/src/62_bader'
src_62_cg_noabirule_includes='-I$(top_builddir)/src/62_cg_noabirule -I$(top_srcdir)/src/62_cg_noabirule'
src_62_iowfdenpot_includes='-I$(top_builddir)/src/62_iowfdenpot -I$(top_srcdir)/src/62_iowfdenpot'
src_62_occeig_includes='-I$(top_builddir)/src/62_occeig -I$(top_srcdir)/src/62_occeig'
src_62_poisson_includes='-I$(top_builddir)/src/62_poisson -I$(top_srcdir)/src/62_poisson'
src_62_wvl_wfs_includes='-I$(top_builddir)/src/62_wvl_wfs -I$(top_srcdir)/src/62_wvl_wfs'
src_65_nonlocal_includes='-I$(top_builddir)/src/65_nonlocal -I$(top_srcdir)/src/65_nonlocal'
src_65_psp_includes='-I$(top_builddir)/src/65_psp -I$(top_srcdir)/src/65_psp'
src_66_paw_includes='-I$(top_builddir)/src/66_paw -I$(top_srcdir)/src/66_paw'
src_66_wfs_includes='-I$(top_builddir)/src/66_wfs -I$(top_srcdir)/src/66_wfs'
src_67_common_includes='-I$(top_builddir)/src/67_common -I$(top_srcdir)/src/67_common'
src_67_recursion_includes='-I$(top_builddir)/src/67_recursion -I$(top_srcdir)/src/67_recursion'
src_68_gw_includes='-I$(top_builddir)/src/68_gw -I$(top_srcdir)/src/68_gw'
src_68_rsprc_includes='-I$(top_builddir)/src/68_rsprc -I$(top_srcdir)/src/68_rsprc'
src_72_geomoptim_includes='-I$(top_builddir)/src/72_geomoptim -I$(top_srcdir)/src/72_geomoptim'
src_72_response_includes='-I$(top_builddir)/src/72_response -I$(top_srcdir)/src/72_response'
src_77_ddb_includes='-I$(top_builddir)/src/77_ddb -I$(top_srcdir)/src/77_ddb'
src_77_lwf_includes='-I$(top_builddir)/src/77_lwf -I$(top_srcdir)/src/77_lwf'
src_77_suscep_includes='-I$(top_builddir)/src/77_suscep -I$(top_srcdir)/src/77_suscep'
src_79_seqpar_mpi_includes='-I$(top_builddir)/src/79_seqpar_mpi -I$(top_srcdir)/src/79_seqpar_mpi'
src_83_cut3d_includes='-I$(top_builddir)/src/83_cut3d -I$(top_srcdir)/src/83_cut3d'
src_93_rdm_includes='-I$(top_builddir)/src/93_rdm -I$(top_srcdir)/src/93_rdm'
src_95_drive_includes='-I$(top_builddir)/src/95_drive -I$(top_srcdir)/src/95_drive'
src_interfaces_includes='-I$(top_builddir)/src/interfaces -I$(top_srcdir)/src/interfaces'
sysconfdir='${prefix}/etc'
target='i686-pc-linux-gnu'
target_alias=''
target_cpu='i686'
target_os='linux-gnu'
target_vendor='pc'
wannier90_pkg_name='wannier90-1.1'
wannier90_pkg_string='Wannier90 program 1.1 (upstream release)'
with_64bit_flags=''
with_ar_dbgflags=''
with_ar_optflags=''
with_bigdft_includes=''
with_bigdft_libs=''
with_cc_dbgflags=''
with_cc_ld_dbgflags=''
with_cc_ld_dbglibs=''
with_cc_ld_optflags=''
with_cc_ld_optlibs=''
with_cc_optflags=''
with_config_file=''
with_cpp_dbgflags=''
with_cpp_optflags=''
with_cxx_dbgflags=''
with_cxx_ld_dbgflags=''
with_cxx_ld_dbglibs=''
with_cxx_ld_optflags=''
with_cxx_ld_optlibs=''
with_cxx_optflags=''
with_etsf_io_includes=''
with_etsf_io_libs=''
with_fc_dbgflags=''
with_fc_ld_dbgflags=''
with_fc_ld_dbglibs=''
with_fc_ld_optflags=''
with_fc_ld_optlibs=''
with_fc_optflags=''
with_fc_vendor=''
with_fc_version=''
with_fftw_includes=''
with_fftw_libs=''
with_fox_includes=''
with_fox_libs=''
with_gnu_ld=''
with_gsl_includes=''
with_gsl_libs=''
with_libxc_includes=''
with_libxc_libs=''
with_linalg_includes=''
with_linalg_libs=''
with_linalg_type=''
with_mpi_cc_ldflags=''
with_mpi_cc_libs=''
with_mpi_cflags=''
with_mpi_cppflags=''
with_mpi_cxx_ldflags=''
with_mpi_cxx_libs=''
with_mpi_cxxflags=''
with_mpi_fc_ldflags=''
with_mpi_fc_libs=''
with_mpi_fcflags=''
with_mpi_level=''
with_mpi_prefix=''
with_mpi_runner=''
with_netcdf_includes=''
with_netcdf_libs=''
with_papi_includes=''
with_papi_libs=''
with_plugins_prefix=''
with_plugins_tardir=''
with_scalapack_includes=''
with_scalapack_libs=''
with_timeout='0'
with_wannier90=''
with_wannier90_includes=''
with_wannier90_libs=''
with_xmlf90_includes=''
with_xmlf90_libs=''
xmlf90_pkg_name='xmlf90-1.2g'
xmlf90_pkg_string='XML Fortran 90 Library 1.2g (upstream release)'

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE_NAME "ABINIT"
#define PACKAGE_TARNAME "abinit"
#define PACKAGE_VERSION "5.8.4"
#define PACKAGE_STRING "ABINIT 5.8.4"
#define PACKAGE_BUGREPORT "https://bugs.launchpad.net/abinit/"
#define PACKAGE "abinit"
#define VERSION "5.8.4"
#define ABINIT_VERSION "5.8.4"
#define ABINIT_VERSION_MAJOR "5"
#define ABINIT_VERSION_MINOR "8"
#define ABINIT_VERSION_MICRO "4"
#define ABINIT_VERSION_BUILD "20090816"
#define ABINIT_VERSION_BASE "5.8"
#define GCC_CC 1
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define GCC_CXX 1
#define FC_GCC 1
#define HAVE_FC_EXIT 1
#define HAVE_FC_FLUSH 1
#define HAVE_FC_GAMMA 1
#define ABINIT_TARGET "i686_linux_gnu4.3"
#define HAVE_NETCDF 1
#define HAVE_ETSF_IO 1
#define HAVE_LIBXC 1
#define HAVE_WANNIER90 1
#define USE_MACROAVE 1

configure: exit 0

2009/8/3 张�s <zhangting1980323@gmail.com>

Dear Alain Jacques:

Thanks! I'll try this method.

Regards

                                                                        Zhang Ting

2009/8/3 Alain Jacques <ajs.jacques@gmail.com>

Dear Ting,


张�s wrote:

Dear matthieu verstraete:

Indeed, the abinit-5.8.3 will give off such error messages when I try to compile. I download the package twice, but the error remains.

Regards

                                                                                Zhang Ting

===================
 make multi

...

gzip: /home/phzting/.abinit/tarballs/bigdft-1.2.0.2.tar.gz: unexpected end of file
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now

Your bigdft tar file is corrupted. I downloaded the one from abinit site (http://wwwold.abinit.org/plugins/bigdft-1.2.0.2.tar.gz) and it can be unpacked without problem.
The original takes 944219 bytes, can be checked with sha1sum ... SHA1(bigdft-1.2.0.2.tar.gz)= 1a3754261c6229be17d3cecb70720fefaf843642 or md5sum ... MD5(bigdft-1.2.0.2.tar.gz)= d827ae34c29d75c8310b2dad40c6e50c.
I can only suggest to download it again with a wget or curl, move it to /home/phzting/.abinit/tarballs and check it with a tar tvzf bigdft-1.2.0.2.tar.gz. And if you have the right checksum, please mention your platform, gzip version (gzip -V) and tar version (tar --version)

Kind regards,

Alain

make[2]: *** [uncompress-stamp] Error 2
make[2]: Leaving directory `/home/phzting/src/abinit-5.8.3/plugins/bigdft'
make[1]: *** [package-ready] Error 2
make[1]: Leaving directory `/home/phzting/src/abinit-5.8.3/plugins/bigdft'
make: *** [multi] Error 2

2009/7/28 matthieu verstraete <matthieu.jean.verstraete@gmail.com>

You should also send your config.log file and more system specs. Yann
is on vacation, but perhaps someone else will be able to help.

Matthieu