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- From: guillermo.roman@uam.es
- To: forum@abinit.org
- Subject: segmentation fault
- Date: Wed, 21 Nov 2007 13:54:17 +0100
I am new in abinit.
I am trying to calculate the Total Energies. I have to use 25 Hartrees and a
20 Ang cubic cell.
I get a "segmentation fault just before having calculated the first Etotal.
I though it was a problem of memory, so I reduce the parameters (ecut, acell)
and I get a positive result. However, using these less demanding parameters I
do a monitoring of the memory cost. I am runing in a Intel Xeon 64 dual core
with 4Gb of memory. With 12.5 Ha and 40 bohr cubic cell I get a "segmentation
fault" while abinit print:
P This job should need less than 532.428 Mbytes of memory.
Rough estimation (10% accuracy) of disk space for files :
WF disk file : 34.002 Mbytes ; DEN or POT disk file : 16.002 Mbytes.
So, it seems that it is not a memory problem at all.
I am running a sequencial 5.4.4 version (I have tried 5.3 too)
the only WARNING I receive is related with low ecut I am using:
mkdenpos : WARNING -
Density went < 0 at 36827 points
and was set to 1.00E-14. Lowest was -0.90E-05.
Likely due to too low boxcut or too low ecut for pseudopotential core
charge.
I almost sure is a detail or something that it's missing in th input file
--------------------------------------------------------------
Here is easy the Input file:
# C6H6 molecule in a big box
#
#Definition of the unit cell
acell 40.0 40.0 40.0
#Definition of the atom
ntypat 2
znucl 1 6
natom 24
typat 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2
xangst
-2.5253 0.0064 0.0005
-1.2742 2.1434 0.0006
1.2021 2.1407 0.0005
2.4309 -0.0086 0.0005
1.1848 -2.1480 0.0005
-1.2911 -2.1403 0.0005
-2.5253 0.0064 7.0005
-1.2742 2.1434 7.0006
1.2021 2.1407 7.0005
2.4309 -0.0086 7.0005
1.1848 -2.1480 7.0005
-1.2911 -2.1403 7.0005
-0.7367 1.2078 0.0005
0.6606 1.2074 0.0005
1.3519 -0.0065 0.0005
0.6470 -1.2126 0.0005
-0.7500 -1.2068 0.0005
-1.4463 0.0044 0.0005
-0.7367 1.2078 7.0005
0.6606 1.2074 7.0005
1.3519 -0.0065 7.0005
0.6470 -1.2126 7.0005
-0.7500 -1.2068 7.0005
-1.4463 0.0044 7.0005
#Ionic Relaxation
#ionmov 4 #ionic relaxation by Cradient Conjugated
optcell 0 #optimize the cell shape and dimensions
#ntime 50
#tolmxf 5.0d-5 #hartree/Bohr
#SFC options
ixc 11 #PBE
iscf 17 #Pulay scheme for mixing SFC history (tried
with 5 also)
#npulayit 3 #number of pulay
iprcel 0 #SFC precondition scheme Default
nsppol 1 #number of spin polarization
#Definition of the SCF procedure
nstep 30 # SCF cycles
toldfe 1.0d-6
diemac 2.0
#Definition of the planewave basis set
ecut 25.0 Ry
#Definition of the k-point grid
nkpt 1 # Only one k point is needed for isolated system,
#Debugging options
prtvol 1
istatr 5
- segmentation fault, guillermo . roman, 11/21/2007
- Re: [abinit-forum] segmentation fault, Anglade Pierre-Matthieu, 11/21/2007
- Re: [abinit-forum] segmentation fault, Guillermo Román, 11/22/2007
- <Possible follow-up(s)>
- Re: segmentation fault, guillermo . roman, 11/22/2007
- Re: [abinit-forum] Re: segmentation fault, Anglade Pierre-Matthieu, 11/22/2007
- Re: [abinit-forum] Re: segmentation fault, john Bob, 11/22/2007
- Re: [abinit-forum] Re: segmentation fault, Anglade Pierre-Matthieu, 11/22/2007
- Re: [abinit-forum] segmentation fault, Anglade Pierre-Matthieu, 11/21/2007
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