The ABINIT Users Mailing List ( CLOSED )

[Kris Andersen <kris.andersen@nau.edu>]

Dear Abinitians,

I'm having a problem compiling Abinit on a Cray XD1 with the PGI compiler. The
compilation is "TERMINATED by signal 11" for both versions 5.7.4 and 5.8.3, 
but
on different source files. (Both source files seem to be related to the GW
method?) Your help is very much appreciated! Here is some information about 
the
system followed by the specific error message.

% uname -a
Linux c494n6 2.6.5_H_01_04 #46 SMP Mon Apr 20 14:30:24 CDT 2009 x86_64 x86_64
x86_64 GNU/Linux

% mpif90 -V
pgf90 7.0-2 64-bit target on x86-64 Linux
(This is using MPICH 1.2.6.)

I also get the same error with a newer version of the PGI compiler (8.0.5), 
but
since the system administrators on this machine strongly encourage 7.0.2 
that's
what I'm reporting.

I configured Abinit using

../configure --prefix=/mnt/lustre/opt/petccm/abinit-5.7.4 --enable-64bit-flags
--enable-tricks --enable-mpi=yes --with-mpi-prefix=$MPICH_HOME
--with-linalg-libs="-L$ACML_DIR -lacml"
--with-netcdf-libs="-L/var/opt/netcdf/lib -lnetcdf"
--with-netcdf-includes="-I/var/opt/netcdf/include" --disable-bigdft

(For version 5.8.3 I had to use --disable-libxc too, but that's probably a
different story.)

Everything is fine until either the src/15gw or src/68_gw directory.

Abinit 5.7.4: fails on gw_tools.F90
---------------------------------------

...
/usr/mpich/mpich-1.2.6-pgi702g/bin/mpif90 -DHAVE_CONFIG_H -I.
-I../../../src/15gw -I../.. -I../../src/14iowfdenpot
-I../../../src/14iowfdenpot -I../../src/01manage_mpi
-I../../../src/01manage_mpi -I../../src/15paw -I../../../src/15paw
-I../../src/defs -I../../../src/defs -I../../src/14occeig
-I../../../src/14occeig -I../../src/interfaces -I../../../src/interfaces
-I../../src/lib03numeric -I../../../src/lib03numeric -I../../src/15wfs
-I../../../src/15wfs -I../../src/02toolbox -I../../../src/02toolbox
-I../../src/15nonlocal -I../../../src/15nonlocal -I../../src/11util
-I../../../src/11util -I../../src/13ionetcdf -I../../../src/13ionetcdf
-I../../src/15common -I../../../src/15common -I../../src/13xc
-I../../../src/13xc -I../../src/12geometry -I../../../src/12geometry
-I../../src/lib01hidempi -I../../../src/lib01hidempi -I../../src/13recipspace
-I../../../src/13recipspace -I../../src/13iovars -I../../../src/13iovars
-I../../src/12ffts -I../../../src/12ffts -I../../src/13io_mpi
-I../../../src/13io_mpi 
-I/scratch/kreander/abinit-5.7.4/kamala/plugins/etsf_io
-I/var/opt/netcdf/include    -O2 -g  -module
/scratch/kreander/abinit-5.7.4/kamala/tmp-modules
-I/scratch/kreander/abinit-5.7.4/kamala/tmp-modules -Mextend -c -o gw_tools.o
../../../src/15gw/gw_tools.F90

pgf90-Fatal-/opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902 TERMINATED by signal 11

Arguments to /opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902
/opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902 /tmp/pgf90ytebiczW22dZ.ilm -fn
../../../src/15gw/gw_tools.F90 -debug -x 120 0x200 -opt 2 -terse 1 -inform 
warn
-x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 16 -x 19
0x400000 -x 28 0x40000 -x 70 0x8000 -x 122 1 -quad -x 120 0x80000000 -x 59 4 
-x
59 4 -tp k8-64e -x 124 0x1400 -y 15 2 -x 57 0x3b0000 -x 58 0x48000000 -x 49
0x100 -x 120 0x200 -astype 0 -x 124 1 -cmdline '+pgf90
../../../src/15gw/gw_tools.F90 -DHAVE_CONFIG_H -I. -I../../../src/15gw -I../..
-I../../src/14iowfdenpot -I../../../src/14iowfdenpot -I../../src/01manage_mpi
-I../../../src/01manage_mpi -I../../src/15paw -I../../../src/15paw
-I../../src/defs -I../../../src/defs -I../../src/14occeig
-I../../../src/14occeig -I../../src/interfaces -I../../../src/interfaces
-I../../src/lib03numeric -I../../../src/lib03numeric -I../../src/15wfs
-I../../../src/15wfs -I../../src/02toolbox -I../../../src/02toolbox
-I../../src/15nonlocal -I../../../src/15nonlocal -I../../src/11util
-I../../../src/11util -I../../src/13ionetcdf -I../../../src/13ionetcdf
-I../../src/15common -I../../../src/15common -I../../src/13xc
-I../../../src/13xc -I../../src/12geometry -I../../../src/12geometry
-I../../src/lib01hidempi -I../../../src/lib01hidempi -I../../src/13recipspace
-I../../../src/13recipspace -I../../src/13iovars -I../../../src/13iovars
-I../../src/12ffts -I../../../src/12ffts -I../../src/13io_mpi
-I../../../src/13io_mpi 
-I/scratch/kreander/abinit-5.7.4/kamala/plugins/etsf_io
-I/var/opt/netcdf/include -O2 -g -module
/scratch/kreander/abinit-5.7.4/kamala/tmp-modules
-I/scratch/kreander/abinit-5.7.4/kamala/tmp-modules -Mextend -c -o gw_tools.o
-I/usr/mpich/mpich-1.2.6-pgi702g/include/f90base' -asm 
/tmp/pgf90ytebitH-jeRW.s
make: *** [gw_tools.o] Error 127

Abinit 5.8.3: fails on m_electrons.F90
-------------------------------------------

...
/usr/mpich/mpich-1.2.6-pgi702g/bin/mpif90 -DHAVE_CONFIG_H -I.
-I../../../src/68_gw -I../.. -I../../src/61_ionetcdf 
-I../../../src/61_ionetcdf
-I../../src/32_util -I../../../src/32_util -I../../src/67_common
-I../../../src/67_common -I../../src/28_numeric_noabirule
-I../../../src/28_numeric_noabirule -I../../src/51_manage_mpi
-I../../../src/51_manage_mpi -I../../src/65_nonlocal 
-I../../../src/65_nonlocal
-I../../src/16_hideleave -I../../../src/16_hideleave -I../../src/interfaces
-I../../../src/interfaces -I../../src/59_io_mpi -I../../../src/59_io_mpi
-I../../src/62_occeig -I../../../src/62_occeig -I../../src/56_recipspace
-I../../../src/56_recipspace -I../../src/56_xc -I../../../src/56_xc
-I../../src/42_geometry -I../../../src/42_geometry -I../../src/53_ffts
-I../../../src/53_ffts -I../../src/66_wfs -I../../../src/66_wfs
-I../../src/62_iowfdenpot -I../../../src/62_iowfdenpot -I../../src/18_timing
-I../../../src/18_timing -I../../src/12_hide_mpi -I../../../src/12_hide_mpi
-I../../src/10_defs -I../../../src/10_defs -I../../src/14_hidewrite
-I../../../src/14_hidewrite -I../../src/66_paw -I../../../src/66_paw
-I../../src/57_iovars -I../../../src/57_iovars -I../../src/50_abitypes_defs
-I../../../src/50_abitypes_defs -I../../src/27_toolbox_oop
-I../../../src/27_toolbox_oop
-I/scratch/kreander/abinit-5.8.3/kamala/plugins/etsf_io
-I/var/opt/netcdf/include    -O2 -g  -module
/scratch/kreander/abinit-5.8.3/kamala/tmp-modules
-I/scratch/kreander/abinit-5.8.3/kamala/tmp-modules -Mextend -c -o
m_electrons.o ../../../src/68_gw/m_electrons.F90

pgf90-Fatal-/opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902 TERMINATED by signal 11

Arguments to /opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902
/opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902 /tmp/pgf90CeUcuAzXV_e5.ilm -fn
../../../src/68_gw/m_electrons.F90 -debug -x 120 0x200 -opt 2 -terse 1 -inform
warn -x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 16 
-x
19 0x400000 -x 28 0x40000 -x 70 0x8000 -x 122 1 -quad -x 120 0x80000000 -x 59 
4
-x 59 4 -tp k8-64e -x 124 0x1400 -y 15 2 -x 57 0x3b0000 -x 58 0x48000000 -x 49
0x100 -x 120 0x200 -astype 0 -x 124 1 -cmdline '+pgf90
../../../src/68_gw/m_electrons.F90 -DHAVE_CONFIG_H -I. -I../../../src/68_gw
-I../.. -I../../src/61_ionetcdf -I../../../src/61_ionetcdf -I../../src/32_util
-I../../../src/32_util -I../../src/67_common -I../../../src/67_common
-I../../src/28_numeric_noabirule -I../../../src/28_numeric_noabirule
-I../../src/51_manage_mpi -I../../../src/51_manage_mpi -I../../src/65_nonlocal
-I../../../src/65_nonlocal -I../../src/16_hideleave 
-I../../../src/16_hideleave
-I../../src/interfaces -I../../../src/interfaces -I../../src/59_io_mpi
-I../../../src/59_io_mpi -I../../src/62_occeig -I../../../src/62_occeig
-I../../src/56_recipspace -I../../../src/56_recipspace -I../../src/56_xc
-I../../../src/56_xc -I../../src/42_geometry -I../../../src/42_geometry
-I../../src/53_ffts -I../../../src/53_ffts -I../../src/66_wfs
-I../../../src/66_wfs -I../../src/62_iowfdenpot -I../../../src/62_iowfdenpot
-I../../src/18_timing -I../../../src/18_timing -I../../src/12_hide_mpi
-I../../../src/12_hide_mpi -I../../src/10_defs -I../../../src/10_defs
-I../../src/14_hidewrite -I../../../src/14_hidewrite -I../../src/66_paw
-I../../../src/66_paw -I../../src/57_iovars -I../../../src/57_iovars
-I../../src/50_abitypes_defs -I../../../src/50_abitypes_defs
-I../../src/27_toolbox_oop -I../../../src/27_toolbox_oop
-I/scratch/kreander/abinit-5.8.3/kamala/plugins/etsf_io
-I/var/opt/netcdf/include -O2 -g -module
/scratch/kreander/abinit-5.8.3/kamala/tmp-modules
-I/scratch/kreander/abinit-5.8.3/kamala/tmp-modules -Mextend -c -o
m_electrons.o -I/usr/mpich/mpich-1.2.6-pgi702g/include/f90base' -asm
/tmp/pgf908eUc0SKAX6MC.s

Any ideas?

 Kris