The ABINIT Users Mailing List ( CLOSED )

[matthieu verstraete <matthieu.jean.verstraete@gmail.com>]

Hello Kris (very nice nettiquette! :)

pgi has always been problematic, in particular with more "exotic"
fortran features like modules and optional variables.
could you try to compile the modules with no optimization? Go to
~abinit/kamala/src/68_gw/ and type:

/usr/mpich/mpich-1.2.6-pgi702g/bin/mpif90 -DHAVE_CONFIG_H -I.
-I../../../src/68_gw -I../.. -I../../src/61_ionetcdf 
-I../../../src/61_ionetcdf
-I../../src/32_util -I../../../src/32_util -I../../src/67_common
-I../../../src/67_common -I../../src/28_numeric_noabirule
-I../../../src/28_numeric_noabirule -I../../src/51_manage_mpi
-I../../../src/51_manage_mpi -I../../src/65_nonlocal 
-I../../../src/65_nonlocal
-I../../src/16_hideleave -I../../../src/16_hideleave -I../../src/interfaces
-I../../../src/interfaces -I../../src/59_io_mpi -I../../../src/59_io_mpi
-I../../src/62_occeig -I../../../src/62_occeig -I../../src/56_recipspace
-I../../../src/56_recipspace -I../../src/56_xc -I../../../src/56_xc
-I../../src/42_geometry -I../../../src/42_geometry -I../../src/53_ffts
-I../../../src/53_ffts -I../../src/66_wfs -I../../../src/66_wfs
-I../../src/62_iowfdenpot -I../../../src/62_iowfdenpot -I../../src/18_timing
-I../../../src/18_timing -I../../src/12_hide_mpi -I../../../src/12_hide_mpi
-I../../src/10_defs -I../../../src/10_defs -I../../src/14_hidewrite
-I../../../src/14_hidewrite -I../../src/66_paw -I../../../src/66_paw
-I../../src/57_iovars -I../../../src/57_iovars -I../../src/50_abitypes_defs
-I../../../src/50_abitypes_defs -I../../src/27_toolbox_oop
-I../../../src/27_toolbox_oop
-I/scratch/kreander/abinit-5.8.3/kamala/plugins/etsf_io
-I/var/opt/netcdf/include    -O0 -C -g  -module
/scratch/kreander/abinit-5.8.3/kamala/tmp-modules
-I/scratch/kreander/abinit-5.8.3/kamala/tmp-modules -Mextend -c -o
m_electrons.o ../../../src/68_gw/m_electrons.F90


This is a partial solution, and if it runs your code will at least be
faster than with the full --enable-debug that Yann suggested.
You would have to do the same for each failing module, then come back
to ~abinit/kamala/ and make, etc... until everything compiles.

Matthieu


On Thu, Jul 2, 2009 at 5:11 PM, Kris Andersen<kris.andersen@nau.edu> wrote:
> Dear Abinitians,
>
> I'm having a problem compiling Abinit on a Cray XD1 with the PGI compiler. 
> The
> compilation is "TERMINATED by signal 11" for both versions 5.7.4 and 5.8.3, 
> but
> on different source files. (Both source files seem to be related to the GW
> method?) Your help is very much appreciated! Here is some information about 
> the
> system followed by the specific error message.
>
> % uname -a
> Linux c494n6 2.6.5_H_01_04 #46 SMP Mon Apr 20 14:30:24 CDT 2009 x86_64 
> x86_64
> x86_64 GNU/Linux
>
> % mpif90 -V
> pgf90 7.0-2 64-bit target on x86-64 Linux
> (This is using MPICH 1.2.6.)
>
> I also get the same error with a newer version of the PGI compiler (8.0.5), 
> but
> since the system administrators on this machine strongly encourage 7.0.2 
> that's
> what I'm reporting.
>
> I configured Abinit using
>
> ../configure --prefix=/mnt/lustre/opt/petccm/abinit-5.7.4 
> --enable-64bit-flags
> --enable-tricks --enable-mpi=yes --with-mpi-prefix=$MPICH_HOME
> --with-linalg-libs="-L$ACML_DIR -lacml"
> --with-netcdf-libs="-L/var/opt/netcdf/lib -lnetcdf"
> --with-netcdf-includes="-I/var/opt/netcdf/include" --disable-bigdft
>
> (For version 5.8.3 I had to use --disable-libxc too, but that's probably a
> different story.)
>
> Everything is fine until either the src/15gw or src/68_gw directory.
>
> Abinit 5.7.4: fails on gw_tools.F90
> ---------------------------------------
>
> ...
> /usr/mpich/mpich-1.2.6-pgi702g/bin/mpif90 -DHAVE_CONFIG_H -I.
> -I../../../src/15gw -I../.. -I../../src/14iowfdenpot
> -I../../../src/14iowfdenpot -I../../src/01manage_mpi
> -I../../../src/01manage_mpi -I../../src/15paw -I../../../src/15paw
> -I../../src/defs -I../../../src/defs -I../../src/14occeig
> -I../../../src/14occeig -I../../src/interfaces -I../../../src/interfaces
> -I../../src/lib03numeric -I../../../src/lib03numeric -I../../src/15wfs
> -I../../../src/15wfs -I../../src/02toolbox -I../../../src/02toolbox
> -I../../src/15nonlocal -I../../../src/15nonlocal -I../../src/11util
> -I../../../src/11util -I../../src/13ionetcdf -I../../../src/13ionetcdf
> -I../../src/15common -I../../../src/15common -I../../src/13xc
> -I../../../src/13xc -I../../src/12geometry -I../../../src/12geometry
> -I../../src/lib01hidempi -I../../../src/lib01hidempi 
> -I../../src/13recipspace
> -I../../../src/13recipspace -I../../src/13iovars -I../../../src/13iovars
> -I../../src/12ffts -I../../../src/12ffts -I../../src/13io_mpi
> -I../../../src/13io_mpi 
> -I/scratch/kreander/abinit-5.7.4/kamala/plugins/etsf_io
> -I/var/opt/netcdf/include    -O2 -g  -module
> /scratch/kreander/abinit-5.7.4/kamala/tmp-modules
> -I/scratch/kreander/abinit-5.7.4/kamala/tmp-modules -Mextend -c -o 
> gw_tools.o
> ../../../src/15gw/gw_tools.F90
>
> pgf90-Fatal-/opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902 TERMINATED by signal 
> 11
>
> Arguments to /opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902
> /opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902 /tmp/pgf90ytebiczW22dZ.ilm -fn
> ../../../src/15gw/gw_tools.F90 -debug -x 120 0x200 -opt 2 -terse 1 -inform 
> warn
> -x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 16 -x 
> 19
> 0x400000 -x 28 0x40000 -x 70 0x8000 -x 122 1 -quad -x 120 0x80000000 -x 59 
> 4 -x
> 59 4 -tp k8-64e -x 124 0x1400 -y 15 2 -x 57 0x3b0000 -x 58 0x48000000 -x 49
> 0x100 -x 120 0x200 -astype 0 -x 124 1 -cmdline '+pgf90
> ../../../src/15gw/gw_tools.F90 -DHAVE_CONFIG_H -I. -I../../../src/15gw 
> -I../..
> -I../../src/14iowfdenpot -I../../../src/14iowfdenpot 
> -I../../src/01manage_mpi
> -I../../../src/01manage_mpi -I../../src/15paw -I../../../src/15paw
> -I../../src/defs -I../../../src/defs -I../../src/14occeig
> -I../../../src/14occeig -I../../src/interfaces -I../../../src/interfaces
> -I../../src/lib03numeric -I../../../src/lib03numeric -I../../src/15wfs
> -I../../../src/15wfs -I../../src/02toolbox -I../../../src/02toolbox
> -I../../src/15nonlocal -I../../../src/15nonlocal -I../../src/11util
> -I../../../src/11util -I../../src/13ionetcdf -I../../../src/13ionetcdf
> -I../../src/15common -I../../../src/15common -I../../src/13xc
> -I../../../src/13xc -I../../src/12geometry -I../../../src/12geometry
> -I../../src/lib01hidempi -I../../../src/lib01hidempi 
> -I../../src/13recipspace
> -I../../../src/13recipspace -I../../src/13iovars -I../../../src/13iovars
> -I../../src/12ffts -I../../../src/12ffts -I../../src/13io_mpi
> -I../../../src/13io_mpi 
> -I/scratch/kreander/abinit-5.7.4/kamala/plugins/etsf_io
> -I/var/opt/netcdf/include -O2 -g -module
> /scratch/kreander/abinit-5.7.4/kamala/tmp-modules
> -I/scratch/kreander/abinit-5.7.4/kamala/tmp-modules -Mextend -c -o 
> gw_tools.o
> -I/usr/mpich/mpich-1.2.6-pgi702g/include/f90base' -asm 
> /tmp/pgf90ytebitH-jeRW.s
> make: *** [gw_tools.o] Error 127
>
> Abinit 5.8.3: fails on m_electrons.F90
> -------------------------------------------
>
> ...
> /usr/mpich/mpich-1.2.6-pgi702g/bin/mpif90 -DHAVE_CONFIG_H -I.
> -I../../../src/68_gw -I../.. -I../../src/61_ionetcdf 
> -I../../../src/61_ionetcdf
> -I../../src/32_util -I../../../src/32_util -I../../src/67_common
> -I../../../src/67_common -I../../src/28_numeric_noabirule
> -I../../../src/28_numeric_noabirule -I../../src/51_manage_mpi
> -I../../../src/51_manage_mpi -I../../src/65_nonlocal 
> -I../../../src/65_nonlocal
> -I../../src/16_hideleave -I../../../src/16_hideleave -I../../src/interfaces
> -I../../../src/interfaces -I../../src/59_io_mpi -I../../../src/59_io_mpi
> -I../../src/62_occeig -I../../../src/62_occeig -I../../src/56_recipspace
> -I../../../src/56_recipspace -I../../src/56_xc -I../../../src/56_xc
> -I../../src/42_geometry -I../../../src/42_geometry -I../../src/53_ffts
> -I../../../src/53_ffts -I../../src/66_wfs -I../../../src/66_wfs
> -I../../src/62_iowfdenpot -I../../../src/62_iowfdenpot -I../../src/18_timing
> -I../../../src/18_timing -I../../src/12_hide_mpi -I../../../src/12_hide_mpi
> -I../../src/10_defs -I../../../src/10_defs -I../../src/14_hidewrite
> -I../../../src/14_hidewrite -I../../src/66_paw -I../../../src/66_paw
> -I../../src/57_iovars -I../../../src/57_iovars -I../../src/50_abitypes_defs
> -I../../../src/50_abitypes_defs -I../../src/27_toolbox_oop
> -I../../../src/27_toolbox_oop
> -I/scratch/kreander/abinit-5.8.3/kamala/plugins/etsf_io
> -I/var/opt/netcdf/include    -O2 -g  -module
> /scratch/kreander/abinit-5.8.3/kamala/tmp-modules
> -I/scratch/kreander/abinit-5.8.3/kamala/tmp-modules -Mextend -c -o
> m_electrons.o ../../../src/68_gw/m_electrons.F90
>
> pgf90-Fatal-/opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902 TERMINATED by signal 
> 11
>
> Arguments to /opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902
> /opt/pgi/7.0.2/linux86-64/7.0-2/bin/pgf902 /tmp/pgf90CeUcuAzXV_e5.ilm -fn
> ../../../src/68_gw/m_electrons.F90 -debug -x 120 0x200 -opt 2 -terse 1 
> -inform
> warn -x 51 0x20 -x 119 0xa10000 -x 122 0x40 -x 123 0x1000 -x 127 4 -x 127 
> 16 -x
> 19 0x400000 -x 28 0x40000 -x 70 0x8000 -x 122 1 -quad -x 120 0x80000000 -x 
> 59 4
> -x 59 4 -tp k8-64e -x 124 0x1400 -y 15 2 -x 57 0x3b0000 -x 58 0x48000000 -x 
> 49
> 0x100 -x 120 0x200 -astype 0 -x 124 1 -cmdline '+pgf90
> ../../../src/68_gw/m_electrons.F90 -DHAVE_CONFIG_H -I. -I../../../src/68_gw
> -I../.. -I../../src/61_ionetcdf -I../../../src/61_ionetcdf 
> -I../../src/32_util
> -I../../../src/32_util -I../../src/67_common -I../../../src/67_common
> -I../../src/28_numeric_noabirule -I../../../src/28_numeric_noabirule
> -I../../src/51_manage_mpi -I../../../src/51_manage_mpi 
> -I../../src/65_nonlocal
> -I../../../src/65_nonlocal -I../../src/16_hideleave 
> -I../../../src/16_hideleave
> -I../../src/interfaces -I../../../src/interfaces -I../../src/59_io_mpi
> -I../../../src/59_io_mpi -I../../src/62_occeig -I../../../src/62_occeig
> -I../../src/56_recipspace -I../../../src/56_recipspace -I../../src/56_xc
> -I../../../src/56_xc -I../../src/42_geometry -I../../../src/42_geometry
> -I../../src/53_ffts -I../../../src/53_ffts -I../../src/66_wfs
> -I../../../src/66_wfs -I../../src/62_iowfdenpot -I../../../src/62_iowfdenpot
> -I../../src/18_timing -I../../../src/18_timing -I../../src/12_hide_mpi
> -I../../../src/12_hide_mpi -I../../src/10_defs -I../../../src/10_defs
> -I../../src/14_hidewrite -I../../../src/14_hidewrite -I../../src/66_paw
> -I../../../src/66_paw -I../../src/57_iovars -I../../../src/57_iovars
> -I../../src/50_abitypes_defs -I../../../src/50_abitypes_defs
> -I../../src/27_toolbox_oop -I../../../src/27_toolbox_oop
> -I/scratch/kreander/abinit-5.8.3/kamala/plugins/etsf_io
> -I/var/opt/netcdf/include -O2 -g -module
> /scratch/kreander/abinit-5.8.3/kamala/tmp-modules
> -I/scratch/kreander/abinit-5.8.3/kamala/tmp-modules -Mextend -c -o
> m_electrons.o -I/usr/mpich/mpich-1.2.6-pgi702g/include/f90base' -asm
> /tmp/pgf908eUc0SKAX6MC.s
>
> Any ideas?
>
>  Kris
>



-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Dr. Matthieu Verstraete

European Theoretical Spectroscopy Facility (ETSF)
Dpto. Fisica de Materiales,
U. del Pais Vasco,
Centro Joxe Mari Korta, Av. de Tolosa, 72,   Phone: +34-943018393
E-20018 Donostia-San Sebastian, Spain        Fax  : +34-943018390

Mail : matthieu.jean.verstraete@gmail.com
http://www-users.york.ac.uk/~mjv500